<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23628

Description U-box domain-containing protein 33 isoform A
SequenceMAVVSPMPATTQRMGSVRSLSDAGGKFLEEPNPSVVDQPIYVAVTKEVKESRLNLIWAIQNSGGKRICILYVHVRATMVPLLGGKFPASALKEEQVQAYWEEERQGMHRILDDYLRICQRMGVRAEKLHIEMDSIEKGILELISQHGIQKLVMGAASDKYYNRRMMDLKSKKAISVCKQAPASCHIQFVCKGRLIHTRDRSSNEGNADVTSPLVQQVPNSVRSLRSQSVTLGQDRRANLTNPALELFRRVRSANDGHGASFMTVSSPEDTEGFSTPHDRMGTEVSSDESDRLSRMSPSGLSTCSDSAVELAFTPSLINESSENALELTLSRRIIEDLHYSSPPSTLDGGMDDTIYEQLEQARAEAENATLNAYQETVRRRKAEKDAFEAIRKVKASESLYTEELNLRKMTEEKLRKEKEELESMKSLRDKVKEELCLALDQKESLESQIASSELMVKELEQKILSAVDLLQSYKNERDELQMQRDNALREAEELRKKQGEASGTNVPQLFSEFSFSEIKEATSNFNPSSKIGEGGYGSIFKGVLRHTEVAIKMLNSDSMQGPLEFQQEVDVLSKLRHPNLITLIGACPDSWALVYEYLPNGSLEDRLACKNNTPPLSWQARIRIAAELCSALIFLHSSKPHSVVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSSNTTEFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRVLDAMRVSSGGANSFGLSSEGLLQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDGGHDNSPMTNSKLAHHNLVPNRALRSAIQDWLQNH
Length883
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.422
Instability index51.39
Isoelectric point5.87
Molecular weight98645.87
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23628
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.38|      18|      22|     406|     423|       1
---------------------------------------------------------------------------
  406-  423 (29.13/20.84)	LRKMTEEKL...RKEKEELES
  427-  447 (19.26/11.03)	LRDKVKEELclaLDQKESLES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.24|      15|      15|     298|     312|       2
---------------------------------------------------------------------------
  298-  312 (25.10/15.96)	SGLSTCSDSAVELAF
  315-  329 (23.14/14.12)	SLINESSENALELTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     150.85|      49|      49|     664|     712|       3
---------------------------------------------------------------------------
  593-  631 (28.20/16.01)	................LVY...EYLPNGSLEDRLAcknntpplSW...QAR..IRIAAElCSA
  636-  677 (64.26/47.98)	HSSKPHSVVHGDLKPSNILLDANLIS...............klSD...FGI..CRILSN.CES
  678-  724 (58.40/42.79)	SSSNTTEFWRTDPKGTFVYMDPEFLASGELTPKSD..........vysFGIilLRLL......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.59|      52|     278|     481|     591|       4
---------------------------------------------------------------------------
  539-  591 (89.46/121.31)	IFKGVLRHTEVAIKML..NSDSMQGPLEFQQEVDVL..SKLRHPNLI...TLIGACPDsW
  821-  879 (81.13/27.26)	IFQEVMRDPHVAADGFtyEAEAIRGWLDGGHDNSPMtnSKLAHHNLVpnrALRSAIQD.W
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     107.05|      30|      42|      49|      78|       8
---------------------------------------------------------------------------
   49-   78 (52.16/49.01)	KESRLNLIWAIQNSGGKRICILYVHVRATM
   92-  121 (54.89/52.06)	KEEQVQAYWEEERQGMHRILDDYLRICQRM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.73|      15|      53|     198|     212|       9
---------------------------------------------------------------------------
  198-  212 (27.41/16.78)	RDRSSNEGN...A....DVTSP
  225-  242 (19.24/ 9.57)	RSQSVTLGQdrrA....NLTNP
  249-  267 (21.08/11.19)	RVRSANDGH...GasfmTVSSP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23628 with Med32 domain of Kingdom Viridiplantae
Unable to open file!