<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23627

Description Mediator of RNA polymerase II transcription subunit 33A isoform B
SequenceMLKASLRCNYRFCQSPCWVPFDIYMENAMDSRQIPTKSAIDVLTEAIKTLQILNQASWQETFLALWLSALRLVQRERDPPEGPIPHLVARLCVLLCIVPLAIANVLRDDSEHNSSSVQVSMESEYRHEMKSGSSMKLGLISSVQVLGHFSGLLCPPTLVIDAANQAARKAASFIYNTMNGKGESGTGIHANTNTKAGGNLRHLIVEACIARNLMDTSVYFWPGYVSTSVLSLSDSSPLEKSPWSIFMEGTPLNNTLINSLTVTPASSLVEIEKLYYIALNGSDVERPAAAKILCGASLSHGWYIQEHVVHHVVKLLASPVPPSHSGSQSPLVNNMPMLCAVLRGTSSIDTIHILSLYGVVPAVAASLLPLCETFGSIKPTSNSTGDESSSTSTSTSTYMTFSLAFLFLIRLWKFCRPPLDLCITELGVAVGGLEYILSLHNNRAMFSQDKLKSNPSLSDSASVKPVYIDSFPKLRALYCQYKSCVASALSGISTGNSIHQTANMILSMIYQKITKGGISSSNSSSPTTASSNACSSLMNSGEDNFQRPLLPAWEVLEALPFVLESILTACVHGRISSRELTTGLRDLVDFLPASLAAIIDYFSSEVTRGVWKLVPMNGTDWPSPAALIQSIESEIKAILTHVGVEVPNRSSGGSPVMLPLPMAALVSLSITFKLDKSQEYMHAITGAALENCASGCPWPSMPVIGSLWAQKVRRWHNFIVVSGSRSVFRHSNECVAQLLRSCFTSFLGTLCVSTSKLTAECNVNGLLGSTITAPGPYPFVAPGFLFLRSCRNIHNVQYVNDIIVGLVTEYSNELAGRRMGASSRHIKSNEVSLSLSAQSAKEVATLGASLLCAAGGILLVQELYKETIPTWLLSSRDVKQNNDSVGSYILEGYAMAYLLILSGSIIWGVGTKLPSGTFNRRKRTIEVHLDFLAEVMEKKISLSCNPITWKTYVCCLVGLMVSLAPAWVQEVKVDTLRKLARGLSRWNEHELALSLLHRGGTAAMGALAELVNVIESEHMLPCS
Length1023
PositionTail
OrganismGlycine soja (Wild soybean)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy0.170
Instability index47.79
Isoelectric point7.88
Molecular weight110984.98
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23627
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.53|      33|      76|      11|      45|       1
---------------------------------------------------------------------------
   11-   45 (56.61/44.07)	RFCQSPCWVPFDIymENAMDSRQIPTKSAIDVLTE
   90-  122 (55.92/36.04)	RLCVLLCIVPLAI..ANVLRDDSEHNSSSVQVSME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     276.23|      75|      77|     693|     769|       2
---------------------------------------------------------------------------
  693-  761 (105.18/65.42)	...........ASGcPWPSM.PVIGSLWAQKVRRWHN..FI..VVSGSRSVFRHSNECVAQ.LLRSCFTSFLGTLCVSTSkLTAEC
  762-  839 (97.41/52.40)	NVNGLLGStitAPG.PYPFVaP..GFLFLRSCRNIHNvqYVndIIVG..LVTEYSNELAGR.RMGAS.SRHIKSNEVSLS.LSAQS
  842-  904 (73.64/37.65)	EVATLGASllcAAG....GI.LLVQELYKETIPTW........LLS.SRDV.KQNNDSVGSyILEGYAMAYLLILSGS........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     526.51|     175|     323|     134|     341|       3
---------------------------------------------------------------------------
  134-  341 (263.73/241.92)	SMKLGLISSvqvLGHFSGLLCP.PTLVIDA.........ANQAARKAASFIYNTMNGKGESGTgiHANTNTKAGGNlrhliveACiaRNLMDT..SVYFWPGYVSTSVLslsDSSP.LEKSPWSIFMEG....TPLNNTLINSLTVTPA.........SSLVE..IEKLyyIALNGSDVERPAAakilcgaslshgwYIQ..EHVVHHVVKLLASPVPPSHSGSqSPLVNNMPMLCAV
  462-  666 (262.77/168.73)	SVKPVYIDS...FPKLRALYCQyKSCVASAlsgistgnsIHQTANMILSMIYQKITKGGISSS..NSSSPTTASSN.......AC..SSLMNSgeDNFQRPLLPAWEVL...EALPfVLESILTACVHGrissRELTTGLRDLVDFLPAslaaiidyfSSEVTrgVWKL..VPMNGTDWPSPAA.............LIQsiESEIKAILTHVGVEVPNRSSGG.SPVMLPLPMAALV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23627 with Med33 domain of Kingdom Viridiplantae
Unable to open file!