<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23574

Description Uncharacterized protein
SequenceMNQVAGTNDPEGEPVAQSQEPVSKGSEKSESITVSGEDQEVAPPEDKVPMAVDHPIDEEPVGPATVFCITLKQTKSNLLHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPPNLVRDTSCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSAPATSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWAQWPPSQNGATPKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQVTPKTSTTCGVPPLSPPNWAGFAPLAGYLFSWQDYLLSEAKQGRKQTEQNLGDAVPLYCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIAPTNDFKNHQASSIGVASDVQKTFDSGSDKSKMVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGGVHVFSGPNFAPVDNYQINVGSAIAAPAFSSTSCCSASVWHDTIKDRTVLRIVRVLPPAIPVSQAKANSSTWERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYGPSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGKGIESALVNSSSLVPEAWHASGETLSNIDPESMAIEPALIPTIQAYVDAVLDLASHFITRLRRYASFCRTLASHAATASTGSNRNVVTSPTQSSATPATSQGGQNGTTSSMGSTQLQSWVQGAIAKMSNPTEAVSNPTPPPISGPSPFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYMGVANRTTDPTVQKPQPNASATGKTEETTKPVSAVVKSDDGPTGRGGQIVPGIKAGEETAPGRSRVGTGNAGQGYTFEEVKVLFMILMDLCRRTAGLQHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGVPSSESEDVDFGNEAPKLVTCDPLDFSSSEQCDVYYGAQQLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTTTWKAGLEGIWFKCIRCLRQTSAFASPGAPSPPSNNDKEIWWISRWAYGCPMCGGTWVRVV
Length1245
PositionTail
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.08
Grand average of hydropathy-0.190
Instability index48.84
Isoelectric point6.06
Molecular weight134455.46
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23574
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     214.93|      53|     361|     460|     523|       1
---------------------------------------------------------------------------
  469-  523 (89.91/76.35)	SSLQhVVLHPIFGNPT.......SSMGGqPPMQTVWQSK.VD........LSIA....PTNDFKNHQASSIGVAS
  848-  886 (46.98/20.93)	...............T.......SSMGS.TQLQ....SW.VQ........GAIAkmsnPTEAVSNPTPPPISGPS
 1043- 1109 (78.04/39.91)	SNIQ.VRLHYIDGNYTvlpevveASLG..PHMQNMPRPRgADaaglllreLELH....PPAE.EWHRRNMFGVPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     446.90|     113|     764|     354|     467|       2
---------------------------------------------------------------------------
   72-  200 (91.84/45.22)	...............................KQTKSNLLHkmSVPELC...RNFSAvsWC..GKLNAIACAAETcaripsstanppfwipihiviperptecavfnviadSP...RDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPpnlvrD.TSCWqREHEW
  217-  331 (159.49/85.05)	YRWlssKSSAP.ATSKSTFEEKFLSQQSQTSARWPNFL.......CVCSVFSSGSV..QLhwAQWPPSQNGATP....................................KWfctSKGLLGCGPSGIMAGD..AIITDSGAMHVAGVPIVNP.....StIVVW.EVTPG
  354-  467 (195.57/109.64)	PNW...AGFAPlAGYLFSWQDYLLSEAKQGRKQTEQNLGD..AVPLYCSPVSNFSA..YV..SPEAAAQSAATT....................................TW...GSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGP.....S.ITGW.RVQRW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.89|      23|     763|     121|     145|       3
---------------------------------------------------------------------------
  121-  145 (35.31/27.49)	PFwIPIHIVIPERPTECAVfNVIAD
  887-  909 (44.58/23.59)	PF.MPISINTGTFPGTPAV.RLIGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.11|      43|     113|     796|     844|       4
---------------------------------------------------------------------------
  796-  844 (67.79/52.42)	HFITRLRRYASFC....RT.LASHAATAstgsNRnvVTSPTQSSATPATSQGGQ
  911-  958 (72.32/41.25)	HFLHRLCQLLLFCfffrRTqLPRYMGVA....NR..TTDPTVQKPQPNASATGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     368.84|     113|     573|     530|     668|       6
---------------------------------------------------------------------------
  530-  668 (169.98/169.97)	DSGSDKSKMVNFDPFDLPSDVRtlARVVYSAHggeiaiaflrggvHVFSGPNFAPVDNYQINVGSAIAAPAF....SSTSCCSASVWHDTIKDrTVLRIVRVL..PPAIPVSQAKANSSTWERAIaerfWWslmvgVDWWdAVGC
 1116- 1234 (198.86/132.15)	DFGNEAPKLVTCDPLDFSSSEQ..CDVYYGAQ.............QLWPRKRRMSERDAAFGLNTSVGLGAYlgimGSRRDVVTTTWKAGLEG.IWFKCIRCLrqTSAFASPGAPSPPSNNDKEI....WW.....ISRW.AYGC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23574 with Med16 domain of Kingdom Viridiplantae
Unable to open file!