<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23556

Description Uncharacterized protein
SequenceMPSDAKDYTVKMANNSQPPGMQFRPVIQAQQGQPFAPMASQQFGLAGHAIPSSNVAMPVGQSQQLQYSQPMQQLPPRHIQPGQPAPSSQVIPMQYIQTNRPPTSVPPHSQPTVPHLSSHMPSLAVSAATSHSSYTFQPPYSQQQDNVNAMAQYQQSGQMHAPLAGQPWVSSVSQSAATVTPVQQAGVQSSGTPSTDSATSAPNQQSASDWQEHTAADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSDGRKYYYNKVTQQSTWSIPEELKLARELALKAANQGMQLETSDTSNTAVSSAAPSTVTNTASSNTPLTSNGLASSPASVTPIASSTGPQQLVSGLSSTTGTELSTVVTASTAVAGPANPLDTTTPSSVENQASQDFAAPTGGASVKDIEETKKGLPVAGKVNVTLPEEKANDKETFAYANKMEAKIAFKALLESANVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKKAREEFTKMLEECKELTSSMRWSKAINMFENDERFNAVDKMRDREDLFESYMVELERKEKENAAEEHRRNLAEYRKFLESCDYVKVHSPWRKVQDRLEDDDRYLRLEKIDRLLVFQDYIRELEKEEEEQKRVQKERVRRGERKNRDAFRKLLEEHVAAGILNAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVVEDLENQYHEDKTLVKDIIKSGKITVVSTSVFEEFKAAILEEASCETISEINLKLIFEDLLERAKEKEEKEAKKRQRLADDLTNLLYTFKDITTSSTWEDCKPLVEETQEYRSMGDENYSREVFEEYITYLKEKAKEKERKREEEKARKEKEREEKEKRKEKEKEKKEKDREREKEKSKDRHKKDDTDSENQDIESHGFKEEKKKDKDKERKHRKRRHSSVEDVDSERDEKEESKKSRKHGSDRKKSRKHANSPESDNETRHRRHKREHRDGSRKTGGHEELEDGELGDDAEI
Length998
PositionUnknown
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.06
Grand average of hydropathy-1.130
Instability index54.53
Isoelectric point6.29
Molecular weight114006.19
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23556
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     170.76|      29|      29|     837|     865|       1
---------------------------------------------------------------------------
  571-  598 (28.82/11.43)	EE......HRRNLAEY..RK......FLESCDyvkvhSPWRK
  837-  865 (45.77/22.70)	KEKAKEKERKREEEKA..RK......EKEREE.....KEKRK
  869-  898 (36.66/16.64)	KEK.KEKDREREKEKSkdRH......KKDDTD.....SENQD
  906-  940 (33.69/14.67)	EEKKKDKDKERKHRKR..RHssvedvDSERDE.....KEESK
  941-  962 (25.82/ 9.44)	KSRKHGSDRK....KS..RK......HANSPE.....SD...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.24|      37|      38|     202|     238|       2
---------------------------------------------------------------------------
  202-  238 (75.19/54.34)	P.NQQSASD.WQEHTAADGRRYYYNKRTRQSSWEKPLEL
  241-  279 (65.06/45.88)	PiERADASTvWKEFTSSDGRKYYYNKVTQQSTWSIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.97|      19|      21|     101|     119|       3
---------------------------------------------------------------------------
   73-  103 (23.47/10.94)	QLPPrHIQPGQPAPSSQvipmqyiqtnrPPT
  104-  123 (33.88/19.26)	SVPP.HSQPTVPHLSSH..........mPSL
  178-  193 (19.61/ 7.86)	TVTP.VQQAGVQ..SSG...........TP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     111.09|      21|      21|     311|     331|       4
---------------------------------------------------------------------------
  311-  331 (38.81/21.67)	PSTVTNTASSNTP..LTSNGL.AS
  333-  354 (27.31/13.26)	PASVTPIASSTGPqqLVS.GL.SS
  360-  380 (22.22/ 9.54)	LSTVV.TASTAVA..GPANPLdTT
  382-  395 (22.75/ 9.92)	PSSVENQASQD.........F.AA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     295.01|      63|      65|     438|     500|       5
---------------------------------------------------------------------------
  403-  466 (54.49/27.01)	..........KDIEETKKGLpvagkvNVTLPEE..KANDKETfayanKM..........EAKIA...F.KALLE....S.ANVQSDWTWEQAMRE
  467-  534 (84.37/45.64)	IINDKRYNALKTLGERKQAF......NEYLGQR..KKLEAEE....rRM..........KQKKAreeFtKMLEE....C.KELTSSMRWSKAINM
  535-  568 (36.99/16.09)	FENDERFNAVDKMRDREDLF......ESYMVEL..ERKEKEN.....................................................
  603-  679 (73.68/38.97)	LEDDDRYLRLEKI.DRLLVF......QDYIREL..EKEEEEQ....kRVqkervrrgerKNRDA...F.RKLLEehvaA.GILNAKTQWREYCLK
  759-  809 (45.47/21.38)	................KLIF......EDLL.ERakEKEEKEA.....KK..........RQRLA.ddL.TNLLY....TfKDITTSSTWEDCKPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.15|      14|      32|      25|      38|       8
---------------------------------------------------------------------------
   25-   38 (28.69/16.09)	PVIQAQQGQPFAPM
   58-   71 (28.46/15.91)	PVGQSQQLQYSQPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.88|      11|      28|     131|     141|      11
---------------------------------------------------------------------------
  131-  141 (22.58/14.58)	HSSYTFQPPYS
  160-  170 (22.30/14.31)	HAPLAGQPWVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23556 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ELALKAANQGMQLETSDTSNTAVSSAAPSTVTNTASSNTPLTSNGLASSPASVTPIASSTGPQQLVSGLSSTTG
2) KERKREEEKARKEKEREEKEKRKEKEKEKKEKDREREKEKSKDRHKKDDTDSENQDIESHGFKEEKKKDKDKERKHRKRRHSSVEDVDSERDEKEESKKSRKHGSDRKKSRKHANSPESDNETRHRRHKREHRDGSRKTGGHEELEDGELGDDAEI
3) LSTVVTASTAVAGPANPLDTTTPSSVENQASQDFAAPTGGASVKDIEETKK
4) MPSDAKDYTVKMANNSQPPGMQFRPVIQAQQGQPFAPMASQQFGLAGHAIPSSNVAMPVGQSQQLQYSQPMQQLPPRHIQPGQPAPSSQVIPMQYIQTNRPPTSVPPHSQPTVPHLSSHMPSLAVSAATSHSSYTFQPPYSQQQDNVNAMAQYQQSGQMHAPLAGQPWVSSVSQSAATVTPVQQAGVQSSGTPSTDSATSAPNQQSASDWQEHTAADGRRYYYNKRT
284
843
360
1
357
998
410
227










Molecular Recognition Features






MoRF SequenceStartStop




1) AKDYTVKMA
2) ELGDDAEI
3) GHEELED
4) QFRPVIQ
5) TRHRRHKREHRD
5
991
983
22
965
13
998
989
28
976