<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23538

Description Uncharacterized protein
SequenceMTSTNLPSSASKKFEPTDEELIQDFLRNKINGRPLPNYGTILEGELFGTEKNPWEIWEENVENSYDEKDLYFFTTLKRKFSTNSLRMVRTIGLGSWEGEDIGKEIMANKTNQRIGMKKRYRFEKSGTSHDGGWILHQYSIDSSLLPNPSNLSSLMDLMNLDSKSDLLRLIVVVAICLLLYPNISMTTLSTTSIAFFSFFSELMFSNRCSFHISGNDDIAHCNSLDARSKLSANLDSEKEEMKHSSGERRVLGVVIELGLEDVVDVIKVGGDVIKDVEVDAFGATRVTITLWLNIGTKEKEEKDEKEDSEGEEGELVPVATTDSLRILLPSSVAELLAADLLLTPSLRRNHRFFLVIQKSEREKDWSHLYKMLQHQIVQSPARLGLTNPNSPSIPNPTPPKLPPSQSHHHQPHLDHHAAGPSAALLSLLPPLPRAQALLQQMASLTSKLFEVSPNRSFWVTAFRGSIPTFLSTQGQAHSSTPHDSSPSTTKEVISQFTILQTQIFEAVAELQEILDLQDAKQKIDREIRSKDSALLAFANKLKDAERCLDILVDDYSDYRRSTKRLKSGDDSEDDSLTSSTVSSQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASELYNFADLNVGLPKVVETKEKTIEAIIEPPPPQQVDTNLSAIQGLLPPNFTVPPGWKPGMPVQLPIDLPLPPPGWKPGDPVPLPPMDSLPAPRFEQQQVPHHIPQPKQPEVIQVQHVNLDLDGSDSSDYSSDEASSDDED
Length770
PositionMiddle
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.06
Grand average of hydropathy-0.439
Instability index55.44
Isoelectric point5.08
Molecular weight85668.63
Publications

Function

Annotated function
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
DNA binding	GO:0003677	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions

Repeat regions

Repeats

>MDP23538
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.24|      13|      17|     683|     697|       1
---------------------------------------------------------------------------
  683-  695 (32.30/15.14)	PPGWKPGMPVQLP
  702-  714 (31.94/17.26)	PPGWKPGDPVPLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.53|      14|      16|     646|     661|       9
---------------------------------------------------------------------------
  646-  660 (19.26/14.50)	VETKEKTIEAIIePP
  665-  678 (24.27/ 8.50)	VDTNLSAIQGLL.PP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.47|      22|     198|     548|     573|      15
---------------------------------------------------------------------------
  548-  573 (27.35/33.91)	LDILVDDYSDYrrSTKRlKSGDDsED
  749-  770 (40.12/27.14)	LDLDGSDSSDY..SSDE.ASSDD.ED
---------------------------------------------------------------------------




Explaination for Stockholm format The "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space.

#=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00)

#=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column. It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column. This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.

#=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.

Alignment of MDP23538 with Med4 domain of Kingdom Viridiplantae

Intrinsically Disordered Regions

IDR SequenceStartStop
1) MPVQLPIDLPLPPPGWKPGDPVPLPPMDSLPAPRFEQQQVPHHIPQPKQPEVIQVQHVNLDLDGSDSSDYSSDEASSDDED
2) PARLGLTNPNSPSIPNPTPPKLPPSQSHHHQPHLDHH
690
380
770
416

Molecular Recognition Features

MoRF SequenceStartStop
NANANA