<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23536

Description Uncharacterized protein
SequenceMEEQSVVNGIVSGSSSSRTTQELAMEGQKYLEETIEYAFQILSSMNDELCNPVLWSIASPSAASSASPLHHNNGPSSHSSNGGAGDAASDNSNHHAESGAVGGGAGAGGALEEARFRYKNAIASLRNVLEAIPNSQKAKSFDTGSTDSPMELDDMEIEKLEERASSLRKELANKNMHLKILIDQLRDLLSDISTWQKTIKIYVLQKHEIKVGDKVAGRHGNKGSLIIVVAHHMYSMSSYTYLATDYGIQLSLFTHHMWIDGFFIVGAVHAAIFIIVSLGIAMQDYRCQLTFQCPIA
Length296
PositionHead
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.07
Grand average of hydropathy-0.190
Instability index39.66
Isoelectric point5.68
Molecular weight32145.82
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro
plastid	GO:0009536	IEA:UniProtKB-KW
thylakoid	GO:0009579	IEA:InterPro

GO - Biological Function
DNA binding	GO:0003677	IEA:InterPro
DNA-directed 5'-3' RNA polymerase activity	GO:0003899	IEA:InterPro

GO - Biological Process
photosynthesis	GO:0015979	IEA:InterPro
transcription, DNA-templated	GO:0006351	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23536
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.26|      14|      19|      72|      85|       1
---------------------------------------------------------------------------
   72-   85 (26.51/15.83)	NNGPSSHSSNGGAG
   93-  106 (25.75/15.16)	NHHAESGAVGGGAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.95|      27|      58|     111|     137|       3
---------------------------------------------------------------------------
  111-  137 (44.10/36.57)	LEEARFRYKNAIASLRNVLEAIPNSQK
  171-  197 (45.85/38.30)	LANKNMHLKILIDQLRDLLSDISTWQK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23536 with Med30 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SAASSASPLHHNNGPSSHSSNGGAGDAASDNSNHHAESGAVGGGAG
61
106










Molecular Recognition Features






MoRF SequenceStartStop




NANANA