<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23526

Description Uncharacterized protein
SequenceMDTNNWRPNQGAEPIMDNNDWRSQLQPESRQRIVNKIMDTLKRHLPVSGQEGLHELRKIAQRFEEKIFTAATSQPDYLRKISLKMLTMETKNPGNMAGNLPSNQGGTSNKPPDPGLVMQPQVHNAGQQHPMPLPNQPQPRQQLLSQNIQNTIASQPNLPPVSSLAPTPIQNVGQNSSVQTIPGQNSVGSTLGQNSNMQNVFPGSQRQIPGRQQVVPQQQQQSQNSQQYMYQQQQQQLQQQIMKHKIQMQQQQQQQQQQQQNLIQPNQLQSSQQSMMQTMQTSSIPSMQHNQQSNNVQQSTQSMLQQHPQVMRQQQQASIIHPQQTQMSQQSILAPQQQQQQQQQQQQQQQLLGSQANTTNMQHASMLGQQNNVGDMQQPQRLVPQQNNLSNLQQQQLLNQQNNLSNMQQQLANNVNSGMQTSQHSAHMLQQSKVPLQQQSQQNASNLLTSQTQQPQPQAPQQQMMAQVQSQPAQLQQQLGLQQQTNPLQRDMQRLQASSSLLQQQSVLDQQKQLYQSQRPIPETSSTSVDSTAQTGQPSAGDWQEEVYQKIKIMKENYLPELTEMYQKIASKLQQHDLPNQPKSDQLEKLKVFKLMLERIIAFLQVSKGSILPNYKDKMSSYEKQIINFINTNRPRKAPGQLPPTHIHSMSQSQSQVTQVQSHENQMNSQLQTTNIQGSVPMTQQNNITSMQMSVVSPAQQNMINSMQPGTNLDSGQGNAINSLQQVPVSSLQQNPVSAPQQTLTHQQLKQGNQAASPQILQHSSPQVDQQNHPPSLTKAGTPLQSANSPFVGPTPSPPLAPSPMPGDSEKPIAGLSTMSNAGNVGHQQTSSTVAPAQSLAIGTPGISASPLLAEFSGPDGPHGNALAPTSGKSSVTDQPLERLIKVMKSMSSKALTAAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRYTNATPLNVASSAGSMNDSIKQLTLEASDLESTATSSIKKPRIEANHALLEEIREINQRLIDTVVDISEEEVDPTSAAAAADGAEGTVVKCSFVAVALSPSLKSQYASAQMSPIQPLRLLVPTNYPNCSPLLLDKFPVESSKENEDLSLKAKARFSISLRSLSQPMSLGEIARTWDICARTVISEHAQQSGGGSFSSKIDHSDEHLDHLIIGLGFEYR
Length1175
PositionTail
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.03
Grand average of hydropathy-0.775
Instability index66.02
Isoelectric point8.90
Molecular weight129346.24
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23526
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     736.21|      88|      88|     231|     318|       1
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   50-  130 (81.16/14.68)	QEGLHELRK....iaQRFEEKI...FTAAT.....S................QP.D..YLRKISLKML.TM.ETKN...P.GN.MAGN.......L....PSN..QGGTSNKppdpGLVMQ.PQVHNAGQQHP
  133-  222 (71.10/11.88)	LPNQPQPRQ......QLLSQNI...Q..................NTI...asQP.NlpPVSSLAPTPIQNVgQNSSvqtI.PG...QNsvgstlgQ....NSNmqNVFPGSQ....RQIPGRQQVVPQQQQQS
  231-  318 (163.26/37.56)	QQQQQQLQQ......QIMKHKI...QMQQQ.....QQQQQQQQQNLI.....QP.N..QLQSSQQSMMQTM.QTSS...I.PS.MQHN.......Q....QSN..NVQQSTQ....SMLQQHPQVMRQQQQAS
  321-  405 (100.98/20.20)	HPQQTQMSQ......Q....SIlapQQQQQ.....QQQQQQQQQQLL...gsQA.N..TTNMQHASML.G..QQNN...V.GD.MQQP.......QrlvpQQN..NL.........SNLQQQ.QLLNQQNNLS
  406-  500 (95.54/18.69)	NM.QQQLANnvnsgmQTSQHSA...HMLQQskvplQQQSQQNASNLLtsqtqQP....QPQAPQQQMMAQV.Q..S...Q.PA...QL.......Q....QQL..GLQQQTN....P.LQRDMQ..RLQASSS
  503-  561 (52.11/ 6.59)	........................................QQQSVLD.....QQ.K..QLYQSQRPIPETS.STSV...D.ST.AQTG.......Q....PSA..G...DWQ....EEVYQKIKIMKENYLPE
  666-  743 (91.28/17.50)	.QMNSQLQT......TNIQGSV...PM.TQ.....QNNITSMQMSVV.....SP........AQQNMINSM.QPGT..nL.DS.GQGN............AIN..SLQQVPV....SSLQQNP.VSAPQQ..T
  746-  829 (80.77/14.57)	HQQLKQGNQ......AASPQIL...QHSSP.....QVDQQNHPPSLT.....KAgT..PLQSANSPFVGPT.PSPP...LaPSpMPGD.......S....EKP..IAGLSTM....S...NAGNVGHQQ....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.32|      12|      16|     851|     862|       2
---------------------------------------------------------------------------
  851-  862 (22.69/11.25)	PLLAEFSGPDGP
  869-  880 (21.63/10.40)	PTSGKSSVTDQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.78|      15|      16|     890|     905|       4
---------------------------------------------------------------------------
  890-  905 (19.69/12.79)	SMSSKALTAAVSDiGS
  908-  922 (27.08/13.80)	SMNDRIAGSAPGN.GS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.02|      15|      16|    1092|    1106|       5
---------------------------------------------------------------------------
 1092- 1106 (24.28/15.55)	K..FPVESSKENEDLSL
 1109- 1125 (19.75/11.05)	KarFSISLRSLSQPMSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23526 with Med15 domain of Kingdom Viridiplantae
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