<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23514

Description Uncharacterized protein
SequenceMNQVGGTKGPVVEDEEPEAVAEAQEKNEAVEFSGEQKQPPVENPMEEDSVTTTPATVFCIRLKQPKSHLLHKMSVPEVCRNFSVVSWCGKLNAIACASETCARIPSSTANPPFWIPIHIVIPERPTECAVFDVLAANFHGRVTIWTQPSQGPANLVRDTSYWQLEHEWRQDIAVVTKWLSGVPLYRWLSSKSSCAANSKSIFEEKFISQQFQTSARWPNFLCVCSVFSSGSVQLHWSQWPHCQNAAPARWFCTSKGLLGCGPSGIMDADAIIMDSGAMHVAGVPIVNPSTVVVWEVMPGPGNVREKANRPKYWGFYTTSLLPVSNFSAYVSPEAAAQSSAATTWGSGVTAVAFDPTRGGFVIAVVIIEDINHSHQVIYELSRGIPIQCNSGKQVSNQKTKSMQTFP
Length406
PositionTail
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.09
Grand average of hydropathy-0.145
Instability index45.89
Isoelectric point6.22
Molecular weight44498.05
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23514
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     266.67|      79|     148|      78|     162|       1
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   78-  162 (130.23/89.81)	VCRNFSVVS.......WCGKLNAiACASETCARIPSSTANPPFWIPIHIVIPERPTeCAVFDVLAANfHGRVTIW.TQPsqGPANlVRDTS....YW
  223-  313 (136.43/73.92)	VCSVFSSGSvqlhwsqWPHCQNA.APARWFCTSKGLLGCGPSGIMDADAIIMDSGA.MHVAGVPIVN.PSTVVVWeVMP..GPGN.VREKAnrpkYW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23514 with Med16 domain of Kingdom Viridiplantae
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