<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23493
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MWTNVFKIGGLHQLSWFQFLPNEPDPCFLPDKSNKVDQKDAAMLAVISSHLQLQKEGFLSAWTNSFVGPWDPSQGLHNPDEKIKLWLFIPGRHSSVIETAQSAVSGLRVVASGLWLAPGDVEEVAAALSQALRNCIERALNGLYYMRFGEVFSKFHHFQSEELFRKGQPTVEFVFAATEEAIFVHVIVSSKHIRMLSTGDLEKVLKHSMEAKYRLPVIVSPHGIRGSLVGSSPSDLVKQSYFSTSKFRASSGIIGLPNHVSQGVGCQLRGQNCYVEVSLGFPRLVTDKALQSNKNSVRNLSKLHVAESPAAGRSDHKGSPDHLSDCEKTFLYPAEAVLVPVLQTSLARSSLRRFWLQNWMGPSLPGSSSFIHCAANVDSVEDPWAEINGSRMQNSYDSSSNSNSSSISSLSASSSDSDYKTTGPNELEADADSLTCRQSVVSSGDQLESDGPKLGSKRSRAGVTESLSTATNVPMQDAYMSDFGSMEVNNSAITGVGNEPIGSYWDWGDDDRGVEMDIQALLSEFGDFGDFFENDVLPFGEPPGTAESQALMFSAPDCGDVNSSPVGVMDVSDQMLLPVGFPSFESFDPPPPAAMEECLSKSQDNLNNSMLSGPVNQTQLSYTREFDHIMKTEAMMTFAPEFGAVETPSSELSTTLFKSPYFPKSRKADSSNSSTNSYLYGAAPPSSPCIEGSEGKNGMVINSKTCSGTHDATMNLHSKNYYTYVESRKDINDKKTVTCKNDSIVKSDGMVSPPFSNIGSNAVAKSGLKMNEGTLESEHLLLSAKTLLATDVMCVMFQASMCRLRHTLLSSSNIMPLGFGRPTGVAFFNQLPGDPSTTTENISGKYEVKKKENIPVRIAGDIEGGMLDGHLNAPVGVWRTVGVSKPMKPSSSPNMEVGPSYSHNSFSDEGLLSYSQRKPLQELLDGIALLVQQAISFVDLALDVDCGDGPYGLLALQEQWRRGFCCGPSMIHAGCGGTLASSHSLDIAGVELVDPLSADVHASTVISLLQSDMKTALKSVFPHLEGPLSVTDWCKGRNQSVDTGSILDGVSAESGISECRDSSEPLSPSLSSIGGSSSIKVSNMIDGAKVEENSQRRSGQDMCSSESEQQPCPRLKPTIIALPFPSLLVGYQDDWLKTSANCLQHWEKAPLEPYGLTKPLTYHVVCPDIDPLTSAAADFFQQLGTVYETCKLGTHSPQGLGNQMEIESGKLSSCGFVLLDCPQSMKIESSNASLVGSISDYFLSLSNGWDLTSYLKSLSKALRALKLGSCFSSNPSEGSNSSCMVIYVVCPFPDPSAVLQTVIESSVAIGSVIQQSDRDRRSLLHSQVSKALNVSATVDETSASNILVLSGFSIPKLVLQIVTVDAIFRVTSPSVSELVILKETAFTVYSKARRISRGVSSDFSQSAFSSRSHSVLTQMPSPISGMWKDCVGPRMAGHSIPREGDIDASLRTGTWDNSWQPTRTGGLSCDPSRSGDNFLQDETRYMFEPLFILAEPGSVEHGVSAVGSPNSDSSKTMADDGSGNYMQNTSTTGSADSASSIDGSGSDQKTLPSLHCCYGWTEDWRWLVCIWTDSRGELLDSNIFPFGGISGRQDTKGLQCLFVQVLQQGCLILQSCDTGLAKPRDFVIARIGGFFELEYLEWQKAIYSVGGSEMKKWPMQLRKSMSDGLSATSNGSSLQQPEMSMIPERALPSSPSPLYSPHAKPTGFMKGSLGQPAARKQLMAGHMVDNSRGLLHWAQSISFVSVSMDHTLQLVLPADSSPGYIEGFTPVKSLGSASSAYILIPSPSMRFLPPTTLQLPTCLTAESPPLAHLLHSKGSALPLSTGFVVSKAVPSMRKDYRSNLKEEWPSVLSVSLIDYYGGTNIPQEKILRGINKQGGRIPSWEAKDFEIETHLVLESLAAELHALSWMTVSPTYLERRTALPFHCDMVLRLRRLLHFADKELSKQSEKS |
Length | 1951 |
Position | Kinase |
Organism | Arachis hypogaea (Peanut) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade>
dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.224 |
Instability index | 52.37 |
Isoelectric point | 5.45 |
Molecular weight | 211321.16 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP23493
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 85.69| 25| 28| 1425| 1451| 1
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1425- 1451 (46.19/27.05) GMWKDCVGP.RMAGHSI.P.REGdiDASLR
1453- 1480 (39.50/17.63) GTWDNSWQPtRTGGLSCdPsRSG..DNFLQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 659.06| 190| 201| 1489| 1688| 2
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389- 467 (37.83/11.07) ....................................................................GSRMQNS.YDSSSNSNSS..SIsslsaS........SSDSDYKTTgPN.....ELEADA..DSLTCR..QSvVSSGDQLESDGPKLGSKRSRAGvTESL..............................................................................
1045- 1146 (92.69/45.16) SILDGVSAESGISECRDSS.....................EPLS..PSLSSIGGSSSIKVSNMI.DGA.KVEENS.QRRSGQDMCS..SE.....SeqqpcprlKPTIIALPF.PSL..LVGYQDDWlkTSANCLqhW...........................................................................................................
1488- 1662 (275.24/169.37) ........................E........PLF.ILAEPGSVEHGVSAVGSPNSDSSKTMAdDGSGNYMQNT.STTGSADSAS..SI.....D........GSGSDQKTL.PSLHCCYGWTEDW..RWLVCI..WT.DSRGELLDSNIFPFGGISGRQD.TKGLQ...CLFVQVLQQGCLiLQSCDTGLAKPRDFVIARIGGFFELEY.....LEWqKAIYSV......GGSEMKKWPMqLR
1664- 1872 (253.30/148.90) SMSDGLSATSNGSSLQQPEmsmipEralpsspsPLYsPHAKPTGFMKG..SLGQPAA.RKQLMA....GHMVDNSrGLLHWAQSISfvSV.....S........MDHTLQLVL.PA.DSSPGYIEGF..TPVKSL..GS.ASSAYIL....IPSPSMRFLPP.TT.LQlptCLTAESPPLAHL.LHSKGSALPLSTGFVVSKAVPSMRKDYrsnlkEEW.PSVLSVslidyyGGTNIPQEKI.LR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 51.06| 15| 23| 1197| 1219| 3
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1197- 1215 (23.87/26.24) PQGlgnqMEIESGKLSSCG
1222- 1236 (27.19/ 9.03) PQS....MKIESSNASLVG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 65.67| 19| 28| 519| 540| 4
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519- 540 (30.61/23.70) QALLSEFGDFGDFFENdvlPFG
549- 567 (35.06/19.01) QALMFSAPDCGDVNSS...PVG
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 101.14| 31| 274| 873| 910| 5
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216- 247 (51.05/24.12) PVIV.SPHGIRGSL.VGSSPSDLVKQSYfSTSKF
874- 906 (50.10/40.54) PVGVwRTVGVSKPMkPSSSPNMEVGPSY.SHNSF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 202.02| 65| 449| 299| 370| 6
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299- 370 (104.32/82.12) NLSKLHVAESpaaGRSDHKGS..PDHLSDCEKTFLypAEAVLVPVLQTSLARssLRRFWL..QNWM..GPSLP.GSSSF
757- 828 (97.71/58.04) NIGSNAVAKS...GLKMNEGTleSEHLLLSAKTLL..ATDVMCVMFQASMCR..LRHTLLssSNIMplGFGRPtGVAFF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 91.37| 23| 23| 1337| 1359| 7
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1277- 1299 (25.59/10.67) ...EGSNSScmvIYVVCPFPDPSAVL
1337- 1359 (38.10/19.58) TVDETSASN...ILVLSGFSIPKLVL
1363- 1380 (27.68/12.16) TVD.....A...IFRVTSPSVSELVI
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