<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23469

Description Uncharacterized protein
SequenceMNQVAGTNDPEGEPVAQSQEPVSKGSEKSESITVSGEDQEVAPPEDKAPMAVDHPIDEEPVGPATVFCITLKQTKSNLLHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPPNLVRDTSCWLREHEWRQDIAVVTKWLSGVSPYRWLSSKSSAPATSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWAQWPPSQNGATPKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQVTPKTSTTCGVPPLSPPNWAGFAPLAGYLFSWQDYLLSEAKQGRKQTEQNLGDAVPLYCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIAPTNDFKNHQASSIGVASDVQKTFDSGSDKSKMVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGGVHVFSGPNFAPVDNYQINVGSAIAAPAFSSTSCCSASVWHDTGKDRTVLRIVRVLPPAIPVSQAKANSSTWERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYGPSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGKGIESALVNSSSLVPEAWHASGETLSNIDPESMAIEPALIPTIQAYVDAVLDLASHFITRLRRYASFCRTLASHAATASTGSNRNVVTSPTQSSATPATSQGGQNGTTSSMGSTQLQSWVQGAIAKMSNPTEAVSNPTPPPISGPSPFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYMGVANRTTDTTVQKPQPNASATGKTEETTKPVSAVVKSDDGPTGRGGQIVPGIKAGEETAPGRSRVGTGNAGQGYTFEEVKVLFMILMDLCRRTAGLQHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGVPSSESEDVDFGNEAPKLVTCDPLDFSSSEQCDVYYGAQQLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTTTWKAGLEGIWFKCIRCLRQTSAFASPGAPSPPSNNDKEIWWISRWAYGCPMCGGTWVRVV
Length1245
PositionTail
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.08
Grand average of hydropathy-0.183
Instability index49.05
Isoelectric point6.01
Molecular weight134307.27
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23469
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1465.35|     363|     765|      95|     467|       1
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   95-  467 (621.97/311.04)	SWCGKLNAIACA.AETCARIPSSTANPP...FWIPI..HIVIPE.RPTECAVFNVIADSP..RDS..VQFI....EWSPTSCPRALLIANFHGRVTIwtQPSQgpPNlvrdTSCWLREHEWRQDIAVVTKWLSG.......VSPyRWLSSKSSAPATSK.STFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLH.........WAQWPPSQNGATPKW..FCTSKGLLGC....GPSGIMAGDAIITDSGA.....MHVAGV..P...IVNPSTIVVWEVTPGPG.......NGF.QVTPKTSTTCGVPPLSPPNWAGFAPLAGYLFSWQDYLLSEAKQ..GRKQTEQNLGDAVPLYCSPVSNFSAYVSPEAAAQSAATTTWG.SGVTAVAFDpTCGGSVIAVVIVEGQYMSPYDPDEG......PS.....ITGWRVQRW
  557-  884 (393.85/180.18)	VYSAHGGEIAIAfLRGGVHVFSGPNFAPvdnYQINVgsAIAAPAfSSTSCCSASVWHDTG..KDRtvLRIV....RVLPPAIPVSQAKAN.............................................................SS...TWE.RAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNsviavldadFHSLPSAQH...RQQ..YGPSLDRIKCrlleG.SNAQEVRAMVLDMQArllldMLGKGIesA...LVNSSSLVP.EAWHASG.......ETLsNIDPESMAI..EPALIPTIQA....YVDAVLDLASHFITRLRR...YASFCRTLASHAAT.ASTGSNRNVVTSPTQSSATPATSQGGqNGTT......SSMGSTQLQSWVQGAIAKMSNPTEAvsnptpPP.....ISG......
  887- 1230 (449.53/206.72)	...........................P...F.MPI..SINTGT.FPGTPAV.RLIGDCHflHRL..CQLLlfcfFFRRTQLPRYMGVANRTTDTTV..QKPQ..PN....ASATGKTEETTKPVSAVVKSDDGptgrggqIVP.GIKAGEETAPGRSRvGTGNAGQGYTFEEVKVLFMILMDLCR..RTAGLQ.H...........PLPVSQVGSSNIQvrLHYIDGNYTV....LPE.......VVEASLG.....PHMQNM..PrprGADAAGLLLRELELHPPaeewhrrNMF.GVPSSESEDVDFGN.EAPKLVTCDPL.DFSSSEQCDVYYGAQQlwPRKRRMSERDAAFGLNTS..VGLGAYLGIMGSRRDVVTTTWK.AGLEGIWFK..C....IRCLRQTSAFASPGAPSP.......PSnndkeI..WWISRW
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23469 with Med16 domain of Kingdom Viridiplantae
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