<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23468

Description Uncharacterized protein
SequenceMNQVAGTNDPEGEPVAQSQEPVSKGSEKSESITVSGEDQEVAPPEDKAPMAVDHPIDEEPVGPATVFCITLKQTKSNLLHKMSVPELCRNFSAVSWCGKLNAIACAAETCARIPSSTANPPFWIPIHIVIPERPTECAVFNVIAVLVLDFKLLLQKWCKYEICSFGHVIGYVSSADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPPNLVRDTSCWLREHEWRQDIAVVTKWLSGVSPYRWLSSKSSAPATSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWAQWPPSQNGATPKWFCTSKGLLGCGPSGIMAGDAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNGFQVTPKTSTTCGVPPLSPPNWAGFAPLAGYLFSWQDYLLSEAKQGRKQTEQNLGDAVPLYCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTCGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIAPTNDFKNHQASSIGVASDVQKTFDSGSDKSKMVNFDPFDLPSDVRTLARVVYSAHGGEIAIAFLRGGVHVFSGPNFAPVDNYQINVGSAIAAPAFSSTSCCSASVWHDTGKDRTVLRIVRVLPPAIPVSQAKANSSTWERAIAERFWWSLMVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSAQHRQQYGPSLDRIKCRLLEGSNAQEVRAMVLDMQARLLLDMLGKGIESALVNSSSLVPEAWHASGETLSNIDPESMAIEPALIPTIQAYVDAVLDLASHFITRLRRYASFCRTLASHAATASTGSNRNVVTSPTQSSATPATSQGGQNGTTSSMGSTQLQSWVQGAIAKMSNPTEAVSNPTPPPISGPSPFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRYMGVANRTTDTTVQKPQPNASATGKTEETTKPVSAVVKSDDGPTGRGGQIVPGIKAGEETAPGRSRVGTGNAGQGYTFEEVKVLFMILMDLCRRTAGLQHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHRRNMFGVPSSESEDVDFGNEAPKLVTCDPLDFSSSEQCDVYYGAQQLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTTTWKAGLEGIWFKCIRCLRQTSAFASPGAPSPPSNNDKEIWWISRWAYGCPMCGGTWVRVV
Length1276
PositionTail
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.08
Grand average of hydropathy-0.159
Instability index48.29
Isoelectric point6.09
Molecular weight137849.49
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23468
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     591.53|     134|     765|     365|     498|       1
---------------------------------------------------------------------------
  257-  362 (123.71/67.41)	................................AP.ATS...........KST.........FEEKFLSQQSQTSARWP....NFL.....CVCSVFSSGSVQ.lhwAQWPPSQNGATPKWfctSKG...LLG........CG...........PSGImagdAIITDSGAMHVAGVPI............VNPS....tIVVWEVTPG
  365-  498 (246.33/142.88)	NGFQVT..P....KTSTTCGVPPLSPPNWAGFAPLAGY...........LFS.........WQDYLLSEAKQGRKQTE....QNLGDAVPLYCSPVSNFSAYV...SPEAAAQSAATTTW...GSG...VTAVA.FDPT.CG...........GSVI....AVVIVEGQYMSPYDPD............EGPS.....ITGWRVQRW
  501-  574 (69.73/34.20)	SLQHVVlhPifgnPTSSMGGQPPMQ.TVWQSK........................................................VDLSIAPTNDFKNHQ...ASSIGVASDVQKTF...DSGsdkSKMVN.FDP.....................................................................
  592-  738 (111.49/59.90)	HGGEIA.......IAFLRGGVHVFSGPN...FAPVDNYqinvgsaiaapAFSstsccsasvWHD.......TGKDRTVlrivRVLPPAI.....PVSQAKANS...S..TWERAIAERFW...WSL...MVGVDwWDAVgCTqsaaedgivslNSVI....AVL..........DADfhslpsaqhrqqYGPS.....L........
 1214- 1261 (40.27/16.06)	...................................................................................................................VTTTW...KAG...LEGIW.FK...C...............I....RCLRQTSAFASPGAPS............P.PSnndkeI..WWISRW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.56|      50|     768|     187|     244|       2
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  187-  244 (80.36/56.00)	WSPTSCPRALLIANFHGRVTIwtQPSQgpPNlvrdTSCWLREHEWRQDIAVVTKWLSG
  957- 1006 (86.20/41.22)	FRRTQLPRYMGVANRTTDTTV..QKPQ..PN....ASATGKTEETTKPVSAVVKSDDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.06|      43|     114|     794|     839|       5
---------------------------------------------------------------------------
  794-  839 (66.52/52.93)	ETLSNIDPE.........SMAIEPALIPTIQAyVDAVLDlaSHFITRLRRYASFC
  903-  954 (74.54/47.82)	EAVSNPTPPpisgpspfmPISINTGTFPGTPA.VRLIGD..CHFLHRLCQLLLFC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23468 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GVANRTTDTTVQKPQPNASATGKTEETTKPVSAVVKSDDG
2) MNQVAGTNDPEGEPVAQSQEPVSKGSEKSESITVSGEDQEVAPPEDKAPMAVDHPI
3) STGSNRNVVTSPTQSSATPATSQGGQNGTTSSMGS
967
1
850
1006
56
884










Molecular Recognition Features






MoRF SequenceStartStop




NANANA