<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23461

Description Uncharacterized protein
SequenceMDAQQTTNRMCSITQMKQFQSNSAGGLHCQGKRPSVNWSQHEEAHQNFSCQLKFLSSNFLFSLPTQKPQNGEPTDGRFVINQNPNIQTSQRAQVEKAWLALSSLQNSSRSYPQPGKTVQVTPRHHEDRRMNPLQRTHENDKLKPPDVTTTPIVTNHNSQVLDSSVNKHIKHAGQINESSTGMVVDIDDDDILETIDIDQIVENYQSSSTPKPPISKFPPITPTADTNNFARDGGNCLPPELCIDCNHGYKLGLCPEATSHLQEFKDNLIAISNELLDNVDNLTSLQLAKLRQDRSQLNMKIQQLEKYIHSNNLEDRKKSNLFASTAPTSFVYETPQQTLHSNAPKTYESQDYVGNGTCGSLFQSLSFSCADTYGVSSGPVSREAFIPKIIEVNYIEGSGDKRWSSKDFPWTKQLEVNNKKVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANISAAYLSANMEWTEQQEIFRELNSEYCNYKLLYVTPEKIAKSDALLRNLESLHARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVLPKTKKCLEDVDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEFGHKSAFYHGNMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCILYYSYSDYIRVKHMISQGAIEQNSMTYGYSRSNMTNSGRILETNTENLLRMVSYCENDVDCRRLLQLAHFGEKFDSSTCQKTCDNCLKNTSFIEKDVTEIAKQLVELVKLTGQKVSSSHILEVYRGSLSQLVKKHRHDTLSFHGAGKRLAKGEASRVLHHLVVEDFLVEEVKKSDFYGSVSSILKVNDPKVHNLLLGGQRIILRFPSSIKASKLAKYEFTPAKGSLTSGKQNSHQIDTPAQPQTQVDMNLSAKLYSALRLLRATILGEAGDDVLAHHLMSKKVPRTKEELLELNGMSKAKVSNYGDQILETIENTINEYYKLDKSSNGSADSAKRRRDANGGLDRNLEDDDELPKSTGRSKKRTVQRNNKKAEIYHSEEEDNYYGCLDEDLDFDNIENEALNRINSRNANGRVLPQWTPS
Length1167
PositionUnknown
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.07
Grand average of hydropathy-0.565
Instability index44.56
Isoelectric point7.07
Molecular weight131428.76
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23461
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     468.63|     146|     188|     197|     349|       1
---------------------------------------------------------------------------
  197-  349 (236.90/175.49)	IDQIVE.NYQSSSTPKPPISKFPPITPTADTNNFARDGGNCLPP...ELCIDCNHGYK.LGLCPeaTSHLQEFKDNLIAIsneLLDNVDNLTSlQLAKLRQDRSQLNMKIQQLEKYIhSNNLEDRKKSNLF....ASTAPTSFVYETPQQTLHSNA.PKTYES
  386-  541 (231.73/150.64)	IPKIIEvNYIEGSGDKRWSSKDFPWTKQLEVNNKKVFGNHSFRPnqrEIINATMSGCDvFVLMP..TGGGKSLTYQLPAL...ICPGITLVIS.PLVSLIQDQIMHLLQANISAAYL.SANMEWTEQQEIFrelnSEYCNYKLLYVTPEKIAKSDAlLRNLES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     151.97|      58|     148|     652|     799|       2
---------------------------------------------------------------------------
  610-  691 (89.87/72.98)	IVFRQSFNRPNLRYSV...LPK....................................................tkkcledvdkfirenhfdecgiiYCLSRMDCEKVAeKLQEFGHK..SAFYHGNMDPA..QRAFVQKQ
  704-  725 ( 9.95/150.61)	VAFGMGINKPDVRFVIhhsLPK.......................................................................................................................
  801-  843 (52.15/ 0.00)	......................siegyhqecgragrdglrsscilyysysdyirvkhmisqgaieqnsmtygysrsnmtnsgriletntenllrmvsYCENDVDCRRLL.QLAHFGEKfdSSTCQKTCDNClkNTSFIEKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.40|      56|     185|     844|     905|       3
---------------------------------------------------------------------------
  844-  900 (87.20/84.39)	VTeIAKQLVELVKLTGQKVSSSHILEVYRGSLSQLVKKHRHDTLSFHGAGK..RLAKGE
  908-  965 (87.20/65.84)	LV.VEDFLVEEVKKSDFYGSVSSILKVNDPKVHNLLLGGQRIILRFPSSIKasKLAKYE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.60|      59|      73|    1026|    1088|       4
---------------------------------------------------------------------------
 1026- 1088 (81.89/63.56)	MSKKVPRTKEELLELNGmSKAKVsnYGDQILETIENTINEYYKLDKSSNGSADSAKrRRDANG
 1100- 1158 (99.71/61.17)	LPKSTGRSKKRTVQRNN.KKAEI..YHSEEEDNYYGCLDEDLDFDNIENEALNRIN.SRNANG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23461 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SLQNSSRSYPQPGKTVQVTPRHHEDRRMNPLQRTHENDKLKPPDVTTTPIVTNHNSQVLDSSVNKHIKHAGQINESSTGMV
2) VENYQSSSTPKPPISKFPPITPTADTNNFAR
3) YKLDKSSNGSADSAKRRRDANGGLDRNLEDDDELPKSTGRSKKRTVQRNNKKAEIYHSEE
103
201
1067
183
231
1126










Molecular Recognition Features






MoRF SequenceStartStop




1) VLPQWT
1160
1165