<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23446

Description Uncharacterized protein
SequenceMHTQQFCHRSTNRKEAEFFLDQSCIDVERLLLRAISCNPCTSLLEIKRELGKNNQVCRAADDVVLQSHLGGPDVEYKQKDDKCFSKESEGYEVLRVRAYASCFFTLGVNIRNGRFLLQSSQNIVASSALLECEEALNQGSMTAADVFVSLRSKSLLHLFASIGRVLGLEVFEHGFSTVKVPKNILNGSAMLIMAFPDCGSSCFLMMELDKDFKPLFKLLETQPDSSGKDTLFGVLNQVLRVKRIDIGQLQALEDEMNLSLVDWGKLHSLLPNAACPNQESVREFLTDIRLESSIQNAKGHPSGFSSLVDEVFGLEKGSSAYPFSVQNHGSLPSHYGSVPLNLHSLKAGTPSPKWEGGMQISQVNNVTKPSGVTNHYSDSMFSSGSVKGPVQSNSVGSISTGQGRSAAGKRLFVSRFESLPCTPSLR
Length426
PositionTail
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.07
Grand average of hydropathy-0.193
Instability index46.45
Isoelectric point6.83
Molecular weight46696.61
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23446
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.44|      41|      71|      93|     133|       1
---------------------------------------------------------------------------
   93-  133 (70.10/41.69)	VLRVRAYASCFFTLGV..NIRNGRFLLQSSQNIVASSALLECE
  165-  207 (69.34/41.16)	VLGLEVFEHGFSTVKVpkNILNGSAMLIMAFPDCGSSCFLMME
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.96|      39|      66|     292|     336|       2
---------------------------------------------------------------------------
  292-  336 (58.86/57.25)	SSIQNAKgHPSG....FSslvDEVFGleKGSSAYPFSVQNHGSLPSHYG
  361-  403 (64.10/42.21)	SQVNNVT.KPSGvtnhYS...DSMFS..SGSVKGPVQSNSVGSISTGQG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23446 with Med14 domain of Kingdom Viridiplantae
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