<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23417

Description Uncharacterized protein
SequenceMSIMKSLDHWRSYFRSCSSSSDIFEIIDHAIMVAASDCPKEFKLRRDHIAEMLFSCKQTRCVGCDRVELSVPIDGADGGGARGGGDDDDGAYKSSGFHHNRDGVVEFEAGASKESKVNSSRGDIDDHGDMDVNRVLSNYSFGEAEALTDEMEEQSQFVAEVLRIRDILHNRQEESDGVLFDSLRRLQLMELTFDCLKATEIGKAVNPLRKHASKDIRQLARKLIDDWKEMVDEWVKATAIAGSEGTPDSVNPSVVDEEEGLPSPPLDEGAYLVASTGSIELSQKLIVFYFPLLYVSYLDDVKFFDGMDDIGRFFSDPLQSGQVRNRENGRKPSMDIQNMEKRKPQASNDTAKDSKSQLVKKNEPTVKPSRPVAADSGPGRPPKSSMQRKSNVEPRTENGTVTRKPPVDQQDKSNCSDDVDAKLEATKRKLQVRYQEAEKAKRQRTIQVMELNDLPKQGAGQRNPQFKAGNHNRHWANGRR
Length480
PositionUnknown
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.06
Grand average of hydropathy-0.795
Instability index46.16
Isoelectric point5.73
Molecular weight53730.41
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23417
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.05|      29|      36|     319|     347|       1
---------------------------------------------------------------------------
  319-  347 (51.44/28.76)	QSGQVRNRENGRKPSMDI..QNMEKRKPQAS
  355-  385 (46.61/25.44)	KSQLVKKNEPTVKPSRPVaaDSGPGRPPKSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.40|      24|      37|     184|     207|       3
---------------------------------------------------------------------------
  184-  207 (42.16/27.13)	RRL..QLMELTFDCLKATEI.GKAVNP
  221-  247 (35.24/21.67)	RKLidDWKEMVDEWVKATAIaGSEGTP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23417 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FSDPLQSGQVRNRENGRKPSMDIQNMEKRKPQASNDTAKDSKSQLVKKNEPTVKPSRPVAADSGPGRPPKSSMQRKSNVEPRTENGTVTRKPPVDQQDKSNCSDDVDAKLEATKRKLQVRYQEAEKAKRQRTIQVMELNDLPKQGAGQRNPQFKAGNHNRHWANGRR
314
480










Molecular Recognition Features






MoRF SequenceStartStop




1) QFKAGNHNRHWANG
465
478