<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23409

Description Uncharacterized protein
SequenceMNQVGGTKGPVVEVVEDEEPEAVAEAQEKNEAVELSGEQKQPPVENPMEEDPVTTTPATVFCIRLKQPKSHLLHKMSVPEVCRNFSAVSWCGKLNAIACASETCARIPSSTANPPFWIPIHIVIPERPTECAVFDVLADSPRDSVQFIEWSPTSCPRALLIANFHGRVTIWTQPSQGPANLVRDTSYWQLEHEWRQDIAVVTKWLSGVSLYRWLSSKSSGAANSKSIFEEKFLSQQSQTSAILISARWPNFLCVCSVFSSGSVQLHWSQWPHCQNAAPARWFCTSKGLLGCGPSGIMDADAIITDSGAMHVAGVPIVNPSTVVVWEVMPGPGNGFQATPKTSINNCAPPLSPPNWSGFAPLAAYLFSWQDYLISEEKRGKKLTDQNIGDSIPLHCSPVSNFSAYVSPEAAAQSSAATTWGSGVTAVAFDPTRGGSVIAVVIIEGQYMSPYDPDEGPSVTGWRVQRWESSLQHVVLHPIFGNPTSSMGGQPPMQTVWQSKVDLSIPPTNDFKNHRTHAVGMKTNVQKVSESSFKGVTFDPFDLPSDVRTLARVVYAAHGGEIAIAFLRGGVHIFSGPNFAPVDNYQITVGSAIAAPAFSSTSCCLASVWHDTCKDQTVLKIIRVLPPAIPTSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSIIAVLDADFHSLPSAQHRQQYCPSLDRIKCRLLEGANAQEVRAMVLDMQARLLLDMLGKGIESALIDPSVLVPDPWQVSSDTLSRIDAQAVSVEPALMPSIQAYVDSVLDLASHFITRLRRYASFCRTLATHAVTAGTASNRNIVPSPAAQSSATPAPSQGAQNGTTSSSGTPQMQAWVQGAIAKISNPADGVSNPTPNPPITGPPSFMPISVNTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQLPRYAGGAHRTADANAQKPQPNASAPGNVDEVAKPVSTVVKSDDGQTNRTGQVVPGAKGTEEPTSGRSRVGTGNAGQGYTFEEVKVLFLILMDLCRRTSGLQHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGTDAAGLLLRELELHPPAEEWHRRNMFGGLSSDPNDVGPANKLVSSSPRDLSSLENCDVYHGAHAIWPRKRRMSEREAAFGLNSSVGLGGYLGIMGSRRDVVTALWKTGLEGVWYKCIRCLRQTCAFTSPGSTNPPSQNDREIWWISRWTHGCPICGGTWVRVV
Length1240
PositionTail
OrganismArachis hypogaea (Peanut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> dalbergioids sensu lato> Dalbergieae> Pterocarpus clade> Arachis.
Aromaticity0.08
Grand average of hydropathy-0.163
Instability index46.66
Isoelectric point6.47
Molecular weight134295.66
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23409
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.68|      23|     530|     642|     664|       1
---------------------------------------------------------------------------
  642-  664 (47.14/27.02)	RAIAER.FWWSLLVGVDWWDAVGC
 1182- 1196 (24.08/10.12)	........WKTGLEGV.WYKCIRC
 1212- 1229 (31.46/15.53)	PSQNDReIWW.....ISRWTH.GC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.44|      16|      30|       5|      20|       2
---------------------------------------------------------------------------
    5-   20 (28.80/16.93)	GGTKGPVVEVVEDEEP
   37-   52 (31.64/19.39)	GEQKQPPVENPMEEDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.26|      11|      19|     830|     840|       3
---------------------------------------------------------------------------
  830-  840 (21.95/10.50)	SSATP...APSQGA
  847-  860 (18.30/ 7.43)	SSGTPqmqAWVQGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.57|      16|      30|     483|     498|       4
---------------------------------------------------------------------------
  466-  495 (22.47/12.04)	WES..slqhvvlhpifgnpTSSMGGQPPMQTV
  496-  527 (19.10/ 9.01)	WQSkvdlsipptndfknhrTHAVGMKTNVQKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.47|      32|     568|     315|     346|       5
---------------------------------------------------------------------------
  315-  346 (62.62/33.95)	PIVNPSTVVVWEVMPGPGN.G.FQATPKTS.INNC
  874-  908 (51.85/26.75)	PTPNPPITGPPSFMPISVNtGtFPGTPAVRlIGDC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.01|       9|      17|     569|     578|       8
---------------------------------------------------------------------------
  569-  578 (13.89/14.03)	GVHIfSGPNF
  589-  597 (16.12/ 9.01)	GSAI.AAPAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.92|      18|     766|     271|     289|      12
---------------------------------------------------------------------------
  271-  289 (32.97/22.30)	PHCQNAAPARWfCTSKGLL
 1067- 1084 (35.95/19.45)	PHMQNMPRPRG.TDAAGLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.89|      63|     936|     134|     198|      14
---------------------------------------------------------------------------
  134-  198 (108.96/78.60)	FDVLADSPRDsVQFIEWSPTSCPRAL.LIAN...FHGRVTIWTQP...SQGPANLVRDTS.....YWQLEHEwRQDI
 1103- 1177 (91.93/56.56)	FGGLSSDPND.VGPANKLVSSSPRDLsSLENcdvYHGAHAIWPRKrrmSEREAAFGLNSSvglggYLGIMGS.RRDV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23409 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GGAHRTADANAQKPQPNASAPGNVDEVAKPVSTVVKSDDGQTNRTGQVVPGAKGTEEPTSGRSRVGTGNA
2) MNQVGGTKGPVVEVVEDEEPEAVAEAQEKNEAVELSGEQKQPPVENPMEEDPV
3) SNRNIVPSPAAQSSATPAPSQGAQNGTTSSSGTPQ
934
1
818
1003
53
852










Molecular Recognition Features






MoRF SequenceStartStop




NANANA