<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23406

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMLNYIESKQINMASNLELKVSINEKHNGASFQNSLLSPQQNICAVSCENVMVFTRVLYRSNSFKQNGHQLLIVTNSKNLHLYLKGSSLHDWTNTHTSNWCEEDILFVDFFHTKNGSFIQINDVKINAPYSEKFQCVNFQPTLRSIGNCSQNGFFAITASGLFLACTINANGIMGVEERAILGPVRDNFTLASAAFSQNGHIHVAAWKPDIVKCWEIELGYFERERVATKDGSIFGGISINGNRKLKVRVLSSNFFCPTPLNGEESKGYQAHNVKVTHMQYANSEDPKNLLLFLEFDKDEKEDAVNKTQQKFVLQLYQLQDKVRNIFQFFVQTSLEKTNSTTTVKEWVFQAEWATTSSIVAINTTSQNLFASPSVPFLITVASSDDGIYVINKDTMQQISKYSFHSNYPEDHSSSKRNSTDKKIISFTNTWTNLHLIVLDSSGGLHILSLLKQTDMGSSWLVYIMLLLEYTLVSGNDWWDILMAIPPTSSLTLADRLSEIFYTHPAKFVSNLSSKFLVLKNSILRSCSNLHQRSIEARLQAQLSAILKLFHSLRPVTTDVMNVEKNLYSTIQTYIESRNSLEITDIDKSIDNLLFSCNILDCQVDPTLSQELQILLEFSSDLALYLLFMN
Length629
PositionTail
OrganismArmadillidium vulgare (Pillbug) (Pill woodlouse)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Multicrustacea> Malacostraca> Eumalacostraca> Peracarida> Isopoda> Oniscidea> Crinocheta> Armadillidiidae> Armadillidium.
Aromaticity0.10
Grand average of hydropathy-0.143
Instability index36.54
Isoelectric point6.20
Molecular weight71235.19
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23406
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.03|      12|     147|     104|     125|       4
---------------------------------------------------------------------------
  112-  125 (15.83/ 6.48)	TKNGSFiqINDVKI
  228-  239 (19.20/13.91)	TKDGSI..FGGISI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.19|      19|     145|     184|     206|       5
---------------------------------------------------------------------------
  137-  158 (27.93/10.02)	NFqpTLRSiGNCSQNGFFAITA
  187-  205 (35.27/23.40)	NF..TLAS.AAFSQNGHIHVAA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23406 with Med16 domain of Kingdom Metazoa
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