<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23404

Description Mediator of RNA polymerase II transcription subunit 24
SequenceMVLEPTGIRSLLIRAWRERWTDVQWGIHIKTVLPRYISGDIYQLSDCLLQQALLGSLPNNLILSYLHHSLASQIVSYGGVIESISKYDGVNKPYCIQALLNLMHSMMKNVHCKGKPEDCLKLASALVDGVKWLIQVMIITIEKLVELQTAPEHSANLNLSRNVLQDILSRPFLMCLFNIGCKEDSVVWNECLQRISQLEININGATAGIIENKEALLSDISEIKQVKPMSSIREKPKYDPNKALFGHSVSALVFLEGLTLSELYFEVLRTCFIGLGSPEYKKYQELKWVGYTYIKLSNIIHSIHTSLHGENAGFSKELLTAIQKLSSMTTLLDVADHRVRCNCLEYFFKELIPKGTPANQTNQTPSLDLLSERDAQTILATRMQESNVLKTIKSNESQGSPLSSPDLILRAQPTVLGILKTLTNKNMDSVMPVLSLLISGKSRDLLLIAATSRGDLHIYAQKFVKLNELSMEPTAEAPKLPSTRALTFDISFLLLCHIAQIYGIDVVVSESCDTFVEKWIQNNIPELGKIKTVINPSEVIDVGLIEEFLRQINCMDSETKYIKSNFADLCRFSALAMREMISAAHLGQVGKQMIFELLDKLCCYLCSLPICVTAWLCSYIQQVDGEEAALAMEFIQHLQTKIHVRENVTSSLETFKDRSNLMSEIIGNMADTMKKPNILNIPLSNVSSTNPVPLTDILNDVWNDLRGNNGILTHRVFSLSQDLLRLGGVKWFVTNFVNAALDNVFEDELLRSVDVIYGLFHLDIVNCTLNHVIYTLPSYICGPFSADLMCETRAFSLGRLTAMLLIECWVSLQPQNVPASEVTKTVVVSPVTHLIVFILKELISFPHASTILSLIPPPLLSNLLPLLSPPLTFDYAQLLALSAPDCYQDDISPLPLDILIQSNKKEKEVKESAAKLLCVKRNLDLHC
Length927
PositionTail
OrganismArmadillidium vulgare (Pillbug) (Pill woodlouse)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Multicrustacea> Malacostraca> Eumalacostraca> Peracarida> Isopoda> Oniscidea> Crinocheta> Armadillidiidae> Armadillidium.
Aromaticity0.07
Grand average of hydropathy0.138
Instability index45.12
Isoelectric point5.92
Molecular weight103700.74
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23404
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.31|      50|      69|     348|     401|       1
---------------------------------------------------------------------------
  348-  401 (78.79/65.81)	FKELIPKgtpaNQTNQTPSLDLL...SERDAQTILATRMQESNVL..KTIKSNESQGSP
  419-  473 (73.52/50.75)	LKTLTNK....NMDSVMPVLSLLisgKSRDLLLIAATSRGDLHIYaqKFVKLNELSMEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.17|      15|      15|     658|     672|       2
---------------------------------------------------------------------------
  658-  672 (24.76/14.52)	RSNLMSEIIGNMADT
  675-  689 (24.41/14.21)	KPNILNIPLSNVSST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.44|      18|      69|     109|     126|       3
---------------------------------------------------------------------------
  109-  126 (33.36/20.96)	NVHCKGKP...EDCLKLASAL
  178-  198 (28.07/16.48)	NIGCKEDSvvwNECLQRISQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.77|      35|     480|     286|     322|       4
---------------------------------------------------------------------------
  286-  322 (57.90/37.83)	LKWVGYTYIklSNIIHSIHTSLHGENAGFSKELLTAI
  769-  803 (63.86/36.52)	LNHVIYTLP..SYICGPFSADLMCETRAFSLGRLTAM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.86|      27|     384|     480|     506|       5
---------------------------------------------------------------------------
  480-  506 (48.10/34.31)	LP.STRALTFDISFLLLCHIAQIYGIDV
  864-  891 (45.76/32.23)	LPlLSPPLTFDYAQLLALSAPDCYQDDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.02|      21|      25|     716|     738|       9
---------------------------------------------------------------------------
  716-  738 (33.88/35.22)	VFslSQDLLRLGGVKW..FVTNFVN
  744-  766 (32.15/25.09)	VF..EDELLRSVDVIYglFHLDIVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23404 with Med24 domain of Kingdom Metazoa
Unable to open file!