<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23401

Description Mediator of RNA polymerase II transcription subunit 24-like protein
SequenceMDASSMSANALPALTLTSSKTSEIKALLLQAWRERWDCVQWGTNIKKLLPRGVSGDVYDLGLCILQQSLIGPTPNQLFIDYLNHCITSQIVSYGAVLSAISKYQEMQKTQCILCLLNLVISFKTRIGCYGNEEECISLCKSIIALVSWLYSCLSQAITKSAENKLSAFNQSQNQFVNYGHHHHNHHQSINTPSTTATNSVLPLTAVTNEHFVIIEKVCELLNHLSNSAFLKAIFYVGKIEDPTTYSQLLTKLSELETKIAPGTNLNSQYSKETIETILGFVNSVEWNNCSPTKVASSQLQSFNYSNLNFRYDSIFRSLNAVIAFDAVLNPVCDIDVCAEQIDLISKFNDIPFSDLCCEIIRACFVGLVDAGGSGEDLKWAAFTFLKAPQLLVKLFQMKSDKKSNLTSDLESGLEKLLTYTPLLDLTDTKSNCDCLELFLKELCKTELLTEAKKNRIMTIRQKEASSKVPVSKTDQSQGQGASLILRAEPTVTSILKTLDSDYSKNQDALLGVLCHMVPGKSFELILNAAAATGKLRSFTTKLIKFNEFNKQVTGEGGKASQTRALLFDITFLMLCHIAQNYGTEIVTTNEETKDSFFATWCAQCLTEGGRYRCPDVILTICEANRVDNLLNQFTSTDSEFKTSLVKWHEFCVNAPAAIKEVLIAWEHEAISTDNVKLILDNVKSKMCCLPVVISAWLCSYINILHHDERLKPMNMLQQFMTPLSTGDASANNGSEASTNQDYYKERSTLMAAIIKKMLYDLHPPQQTKSKGIISVISHGLTSKTPLLKIMESNFTAAHDRSWLDLKSVHNMDTLLCVGGSTWFVDSLIRQLLKFEHENDLNRAVDLIFGLFHLDIEQCSLSLLLFVLKSYLLNNHRQEQLCEPKVSALARLTVMTIFSALNEVESIKMGKQRSGRKKHHYYEEIPSDFDPFESDFKTSVNNNGNGPRPPKVAKTDAQYGLSTLLDDTPFSFQQSQHYFQLNEPLTKSVVELLRLLTVIITDSVVSPRTMFPLVFLEQLVMCAKEDSHKILRFLPFHMIISLIKTFPETLTYEFLLAISNLETFKARKITARALCQLKRAKKNGSKVIF
Length1088
PositionTail
OrganismLeptotrombidium deliense
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Acariformes> Trombidiformes> Prostigmata> Anystina> Parasitengona> Trombiculoidea> Trombiculidae> Leptotrombidium.
Aromaticity0.08
Grand average of hydropathy-0.063
Instability index35.96
Isoelectric point6.83
Molecular weight122050.34
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23401
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.99|      38|      46|     588|     632|       1
---------------------------------------------------------------------------
  588-  628 (59.35/58.19)	TNEETKDSfFATWCAQCLTEGGRYRcpDVILTI.CEANRVDN
  636-  674 (62.64/37.29)	TDSEFKTS.LVKWHEFCVNAPAAIK..EVLIAWeHEAISTDN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.83|      27|      66|      78|     105|       2
---------------------------------------------------------------------------
   78-  104 (48.25/28.46)	FIDYLNHCITSQIV.SYGAVLSAISKYQ
  145-  172 (40.58/11.01)	LVSWLYSCLSQAITkSAENKLSAFNQSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     191.96|      69|     177|     675|     745|       3
---------------------------------------------------------------------------
  247-  272 (20.89/ 7.37)	..............................................QLLTKLSELETKIAPGTNLNS..QYSKE
  277-  324 (53.65/30.33)	ILGFVNSVEWNNCSPTKVASSQLQSfnYSNLnFRYDSIFRSLNAVIAF..........................
  675-  745 (117.43/82.87)	VKLILDNVKSKMCCLPVVISAWLCS..YINI.LHHDERLKPMNMLQQFMTPLSTGDASANNGSEASTnqDYYKE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23401 with Med24 domain of Kingdom Metazoa
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