<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23397

Description Mediator of RNA polymerase II transcription subunit 24-like protein (Fragment)
SequenceMDTKMEANILPTLTTSKTSVIKSLLLEAWRERWNSIEWGINIKKVLPRGVSGDVYDLSVCILQQALIGQTPNQLFIDYLNHCVSSQIVSYGAVLSAIAKFQEMQKSQCILCLLNLVISFKQRIGCYGNEEECITLCKSIVSLTLWIYSCVSHAFTVSVESKSFSQNQNQFNYQHHNHHHHSGMAGATGASVVALSPFVGQTNDFYLIIEKIADILNYISNSSFLKALFYVGKMEDPSTYSQLLTRVNEVESKITTASNLNAQFNKEVLETILGFMSAVEWNKCTPTVVASKQLQSTAIGSNNQLIYDSVFRSLNAVIAFDAVLNPVCEIDVCAEQIFLISKFNDISLSDLCCEIIRACFVGLVDSGGSGEDLKWAAFTFLKAPQLLVKLIQMKGEKSKGNLSNDLEVGLEKLLAYTPLLDLTDTKSNCDCLELFLKELCKTELLTENKKNRIMSLRQKETTGKAPLSRADQSQAGQGASLILRAEPTVTSILKTLDSDYSKNQDALLGVLCHMVPGKSFELILNAAAATGKLRSFTTKLIKFNEFNKQVTGEGGKASQTRALLFDITFLMLCHIAQNYGTEIVTANEETKDSFFATWCAQCLTEGGRYRNPDAILINCEQNKVDVLLNQFTSTDSEFKTSLVKWHEFCMNAPAAIKEILLAWEHEVITTDNVKLILDNVKSKMCCLPVVISAWLCSYINVLHHDERLKPINMVQQFMTPLVTDAANNNGSEQQSNSDFYKERSTLMAAIIKKMFYDLHPPYQTKTKGIISVISHGLTSKTPLLKIMETNFALAHDRSWLDVKTVHNMDTLLCVGGSNWFVDALVRHLLKFEHDNDLNRAVDMIFGLFHLDIEQCALSLLLNTLKSYLLNSAKQEQLCEPKISSLARLTVMTIFSALNELQNSKLGKQRSGRKKHHYLEDNPSDFDPFEADLKHSLSNSGSIPRPPKLPKSDTRYGSMTLLEETPFTFQQQQQGQQVSSPFLNEPLTKSIVELLRLLTVIITDSTVSPRTLFPLVFLEQLILCAKEDAHKILRFLPFQMIISLLKTFPETLTYEFLLSISN
Length1060
PositionTail
OrganismDinothrombium tinctorium
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Acariformes> Trombidiformes> Prostigmata> Anystina> Parasitengona> Trombidioidea> Trombidiidae> Dinothrombium.
Aromaticity0.08
Grand average of hydropathy-0.029
Instability index38.58
Isoelectric point6.30
Molecular weight118766.69
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23397
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.71|      54|     129|     645|     713|       1
---------------------------------------------------------------------------
  655-  713 (81.38/81.46)	IKEILLAWEHEVITTDnVKLIlDNVKSKMCclpVVISAW....LCSYINVLHHDERL.KPINMV
  785-  843 (87.33/48.09)	IMETNFALAHDRSWLD.VKTV.HNMDTLLC...VGGSNWfvdaLVRHLLKFEHDNDLnRAVDMI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.56|      58|     129|      49|     128|       2
---------------------------------------------------------------------------
   49-  110 (86.07/65.91)	GVSGdVYDLSVCILQQALIGQTPN.QLFIDYLNHCVSSqIVSYGAVLSA.............IAKFQEMQKSQciL
  182-  216 (38.48/11.89)	GMAG.ATGASVVAL.SPFVGQTNDfYLIIEKIADILN.......................................
  293-  350 (57.01/29.63)	.............LQSTAIG.SNN.QLIYDSVFRSLNA.VIAFDAVLNPvceidvcaeqiflISKFNDISLSD..L
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     138.65|      45|      65|     863|     909|       9
---------------------------------------------------------------------------
  863-  909 (68.28/53.36)	LKSYLLNSAKQEQlcEPKI.SSLARLTVMTIFSALN.ELQNSKLGKQRS
  931-  977 (70.36/47.52)	LKHSLSNSGSIPR..PPKLpKSDTRYGSMTLLEETPfTFQQQQQGQQVS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23397 with Med24 domain of Kingdom Metazoa
Unable to open file!