<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23388

Description U-box domain-containing protein 52 isoform X2
SequenceMAENEFINFNVTAVAIDKDKNSQHAVRWALDHLLINRPFALLIHVINKSHNQMGDGDSYGMEGSPKAERNLADSAEMQQLFRPFRGFCARKGVHVRDIVLEDSDIAKALVDFVANNGITNLVVGTSSRNAISKKFRTHDVPSSVVKSAPDFCTVYVISKTKVMTVRSASRPLPPLLKHRGMLPHFPPELDHEDSLRNRGSWRAPIAPSSTAFVERRSLERSEYMRRERPLMTAKTSPTNTSFDEISIRLSRGRDSLSEDLDFQGYASSYRSSDFCMDGLDHTIVNDSPRSQISSQNTDVEAEMKRLKLELKQTMDMYSTACKEAITAKQKARELHQWKVEEARRMEEARLAEEAALAMVEMEKAKCRAAIEAAEAAQKIAEMEAQKRRNAEMKAKRELEEKMKALDKLASTDRRYRKYTIEEIEIATDRFAEELKIGEGGYGPVYRGTLDHTPVAIKVLRPDAAQGRKQFQQEVEVLSTIRHPNMVLLLGACPEYGCLVYEYMENGSLEDRLFRRGHTPSIPWPVRFKIAAEIATALLFLHQTKPEPLVHRDLKPGNILLDRNNVSKISDVGLSRLVPPSVADSVTQYRMTSAAGTFCYIDPEYQQTGMLGIKSDIYSLGVMLLQIITAKSPMGLTHHIERAIEKGTFADMLDQTVPDWPVEEALSYANLALKCTELRRKDRPDLGTEILPELNRLRAIGMTYESSCASSSSSSNSSLHSNQEQQSHVTDGWSRTPSLVRQRHEDGGELQVGGLLRWKTHTQKIVFPR
Length768
PositionTail
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.06
Grand average of hydropathy-0.497
Instability index52.12
Isoelectric point7.94
Molecular weight86574.63
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23388
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     247.85|      81|     133|     469|     555|       1
---------------------------------------------------------------------------
  469-  555 (133.46/108.26)	QFQQE..VEVLSTIRHPNMVLL..LGACPEYGCL..VYEYMENGSLEDRLfrrghTPSIP.WPVRFKIA.AEIATALLFLHQtKPEPLVHRDLKP
  603-  691 (114.39/77.09)	EYQQTgmLGIKSDIYSLGVMLLqiITAKSPMGLThhIERAIEKGTFADML.....DQTVPdWPVEEALSyANLALKCTELRR.KDRPDLGTEILP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.39|      23|     122|     128|     152|       2
---------------------------------------------------------------------------
  128-  152 (36.50/32.16)	RNAISKKFRTHDVPSSVVKSapDFC
  253-  275 (41.90/29.06)	RDSLSEDLDFQGYASSYRSS..DFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.43|      17|      19|     351|     368|       3
---------------------------------------------------------------------------
  351-  367 (29.76/19.51)	AEEAALAMVEMEKAKCR
  372-  388 (28.67/13.69)	AAEAAQKIAEMEAQKRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23388 with Med32 domain of Kingdom Viridiplantae
Unable to open file!