<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23382

Description WW domain-containing protein
SequenceMAGNPQPSGTQALRPPPAGPPQNFGQPMPMQFRPVVPAQPAQQFIPAASQQFRPLGQGMSAPNAGMPSAQTQQPQYSQQMQQLPPRPGQPGQGPPSSQAIPMPYMQQNRPGTSGSLQPQPSSQPPNNHHPGFGGPGMPLSSSYTFATSYGQPNNINAASQYQPISQMHAPVIPVGAQTWLAPGSQNGPHVTPVSQTGQQPSVTAATSTIQNSTVSSSSDWQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERADASTVWKEFTTTEGRKYYYNKVTKQSKWVIPDELKLAREQAEKAATQLTQSEPSTTSAPAAASAPPAEVTSTESVSTTTSGVASSPILVTPVVNVANPSSVIATGTPPVPAVPTTVTSSSLPLGTTNAIGLPSLNTPVVPVTPSPSAISTGAGVPALALDTNATTSNSNFEKTSLSDVANSADGASAQDLEEAKRGMPVTGRVNVTPLEEKTVDEEPLVYANKQEAKNAFKALLESANVESDWTWEQAMRVIINDKRYGALKTLGERKQAFHEYLGQRKKQEAEERRIKQKKAREDFTKMLEECKELTSTTRWSKAVLLFEDDERFTAVERERDREDLFESYLVDLQKKERAKAQEEHKRNIMEYREFLKSCDFIKANSQWRKVQDRLEDDERCSRLEKIDRLEVFQEYIRDLEKEEEEQRKIQKEQLRRAERKNRDEFRKLMEGHVAAGILTAKTHWRDYCMKVKDLPAYIAVSSNTSGSTPKDLFEDVAEELEKLYHEDKTRIKDALKIGKITLASSWTFETFKSAIAEEESFPTVSEINLKLLFDELLERLKEKEEKEAKKRQRLADDFSDLLYSIKEITASSKWEDSKQLFEDNPKFRAIAEESLKREIFEEYIAHLQEKAKEKERKREEEKVKKEKEREEKEKRKEKERKEKDREREREKGKERSRKEETESENVDVTDSYGTKEERKREKDKDKDRKHRKRHHSTVDDVSSGKDEKEESKKSRRHTSDRKKSRKHGYNSESDSENRHKRHKRDRDGSRRSAYEELEDGELGEDGEIR
Length1038
PositionUnknown
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.06
Grand average of hydropathy-1.078
Instability index57.52
Isoelectric point7.06
Molecular weight117560.48
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23382
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     144.45|      37|      38|     220|     257|       1
---------------------------------------------------------------------------
  220-  256 (73.58/55.45)	WQEHTSADGRRYYYNKKTRQSSWEKPLELMTPIERAD
  261-  297 (70.87/48.11)	WKEFTTTEGRKYYYNKVTKQSKWVIPDELKLAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     248.50|      43|      44|      82|     125|       2
---------------------------------------------------------------------------
    5-   34 (30.50/10.87)	..PQPSGtqalRPP...............pAGPP..QNFGQPMP..MQFRP....
   35-   72 (35.30/11.34)	VVP...A....QPAqQFIPAASQqfrPlG.QGMS..APNA.GMPSAQTQ......
   73-  114 (79.94/40.72)	.QPQYSQ....QMQ.QLPPRPGQ...P.G.QGPP..SSQAIPMPYMQQNRPGTSG
  116-  159 (71.24/36.48)	LQPQPSS....QPP.N.NHHPGF...G.G.PGMPlsSSYTFATSYGQPNNINAAS
  362-  388 (31.51/11.47)	.................PPVPAV...P.T.TVTS..SS....LPLGTTNAIGLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     481.61|      65|      66|     757|     821|       3
---------------------------------------------------------------------------
  478-  545 (72.43/42.60)	KQE..A...KNA..........F.KalLES.ANVESDWTWEQ..AMRVIINDKRYGA...L.KT.LgER.....K.QAFHEYLGQRKKQ.E.AEERRIKQ
  547-  613 (63.48/36.33)	KARedF...TKM..........L.E..ECKeLTSTTRWSKAVllFE....DDERFTA...VeRE.R.DR.....E.DLFESYLVDLQKK.E.RAKAQEEH
  614-  679 (77.29/46.01)	KRN..ImeyREF..........L.K..SCDfIKANSQW..RK..VQDRLEDDERCSR...L.EK.I.DR.....L.EVFQEYIRDL.EK.E.EEEQRKIQ
  680-  754 (46.35/24.31)	KEQ..L...RRAerknrdefrkL.M..EGH.VA.AGILTAKT.hWRDYCMKVKDLPAyiaV.SS...NTsgstpK.DLFEDVAEEL......EK...LYH
  757-  821 (95.63/58.87)	KTR..I...KDA..........L.K..IGK.ITLASSWTFET..FKSAIAEEESFPT...V.SE.I.NL.....K.LLFDELLERLKEK.E.EKEAKKRQ
  824-  888 (68.39/39.77)	ADD..F...SDL..........LyS..IKE.ITASSKW..ED..SKQLFEDNPKFRA...I.AE.E.SL.....KrEIFEEYIAHLQEKaK.EKE.RKRE
  901-  961 (58.04/32.51)	KEK..R...KEK..........E.R..KEK....DREREREK..GKERSRKEE...T...E.SEnV.DV.....T.DSYGTKEERKREK.DkDKDRKHRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.33|      24|      32|     962|     992|       4
---------------------------------------------------------------------------
  962-  985 (40.38/32.41)	RH..HSTVDDVSSGKDEKEESKKSRR
  995- 1020 (37.95/15.66)	KHgyNSESDSENRHKRHKRDRDGSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.48|      15|      17|     163|     178|       5
---------------------------------------------------------------------------
  163-  178 (25.06/19.06)	PISQMHAPVIPVgAQT
  182-  196 (30.42/18.02)	PGSQNGPHVTPV.SQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.43|      10|      22|     311|     320|       6
---------------------------------------------------------------------------
  311-  320 (17.13/ 8.00)	TSAPAAASAP
  332-  341 (17.31/ 8.15)	TTTSGVASSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.12|      18|      43|     343|     360|       7
---------------------------------------------------------------------------
  343-  360 (32.07/22.37)	LVTPVVNVANPSSVIATG
  389-  406 (34.05/24.25)	LNTPVVPVTPSPSAISTG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23382 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKEKERKREEEKVKKEKEREEKEKRKEKERKEKDREREREKGKERSRKEETESENVDVTDSYGTKEERKREKDKDKDRKHRKRHHSTVDDVSSGKDEKEESKKSRRHTSDRKKSRKHGYNSESDSENRHKRHKRDRDGSRRSAYEELEDGELGEDGEIR
2) EQAEKAATQLTQSEPSTTSAPAAASAPPAEVTSTESVSTTTSGVA
3) MAGNPQPSGTQALRPPPAGPPQNFGQPMPMQFRPVVPAQPAQQFIPAASQQFRPLGQGMSAPNAGMPSAQTQQPQYSQQMQQLPPRPGQPGQGPPSSQAIPMPYMQQNRPGTSGSLQPQPSSQPPNNHHPGFGGPGMPLSSSYTFATSYGQPNNINAASQYQPISQMHAPVIPVGAQTWLAPGSQNGPHVTPVSQTGQQPSVTAATSTIQNSTVSSSSDWQEHTSADGRRYYYNKK
4) PSSVIATGTPPVPAVPTTVTSSSLPLGTTNAIGLPSLNTPVVPVTPSPSA
5) STGAGVPALALDTNATTSNSNFEKTSLSDVANSADGASAQDLEEAKRGMPVTGRVNVTPLEEKTVDEEPLVY
880
294
1
353
404
1038
338
236
402
475










Molecular Recognition Features






MoRF SequenceStartStop




1) SAYEELEDGEL
1021
1031