<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23377

Description Putative mediator of RNA polymerase II transcription subunit 26b
SequenceMDRTSGKLDYWRNYFRSANSDIFEVIEYAILVAASDCPQELQMRRDRIAERLFSCRLTRCNGCDHVEIAVPCEGEEEGNGGFKGGFVGEGGSKESKVNSSTNERGEVNRVSNYSYDEAEALTEEIEEESEIVGEVLRIKEVLGNHREESDGVLFESLRRLQLMGLTVETLKATEIGKAVNGLRKHGSKQIRLIAKTLIDAWKHMVDEWVNAVAAISGGTPESVNPTPESVNPSVVDEEEEGLPSPPLDEGALFATQTTMELSQFFDGIDDDGNPRNTLELNKKREFGRKPGSENYDRKRNQQTLNETSVLKDDKSQMRKQEAVIKQTKPSTSNFGPGRPPKLSSDHKATGDSKLPQRVDPLVVQKKRPTSEQDKSIYSDDLVRLKLEASGRNLQERYQQLENAKRQRTIQVMELRDLPKQVSTQRNFHLKPGIHNRHWANGRR
Length443
PositionUnknown
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.05
Grand average of hydropathy-0.867
Instability index46.37
Isoelectric point5.82
Molecular weight49996.22
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23377
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.95|      18|      18|     126|     143|       1
---------------------------------------------------------------------------
  126-  143 (28.76/18.50)	EEESEIVGEVLRIKEVLG
  147-  164 (28.18/17.99)	EESDGVLFESLRRLQLMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.61|      15|     125|      90|     108|       3
---------------------------------------------------------------------------
   67-   81 (26.64/14.20)	EIAVPCEGEEEGNGG
   94-  108 (23.97/ 7.35)	ESKVNSSTNERGEVN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23377 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AISGGTPESVNPTPESVNPSVVDEEEEGLPSPPLDEGALFAT
2) EASGRNLQERYQQLENAKRQRTIQVMELRDLPKQVSTQRNFHLKPGIHNRHWANGRR
3) QFFDGIDDDGNPRNTLELNKKREFGRKPGSENYDRKRNQQTLNETSVLKDDKSQMRKQEAVIKQTKPSTSNFGPGRPPKLSSDHKATGDSKLPQRVDPLVVQKKRPTSEQDKSIYSDDLVRLK
214
387
263
255
443
385










Molecular Recognition Features






MoRF SequenceStartStop




1) KPGIHNRHWANGRR
430
443