<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23373

Description Glycoside hydrolase
SequenceMELLRRRWTRTRNCLGAGFLVPDPATGDDAPYRDPRLPIEARISDLLSRMTLAEKIGQMTQIDRSVASFDVIRDLSIGSVLNGGDSAPSPDWTPSMWADMVDGYQRAALSSRLGIPMIYGTDAVHGHNNVFGSTAFPHNISLGATRDADLVLRIGKATALEIRGTGIPYAFAPCLAYLLYGPLVAKALHSWVYEDGQRYSWCLHILIICALRGLIYQLWHSYGSMLFLTRNRMVNKQGVGYKQIDEEWDCSNANPPFWIPIHIVNPERPTECAIFNVIADSPRDSVQFMEWSPAPCPRALLIANFHGRITIWTQPSQGPVNLVRDASCWHCEHEWRQDLAVVTKWLAGMYPRHFVYTVMALLTCFVSMHLVCCVCQEQVGVGVGVRLTFCPPVLGFIVFGEMRVDLVEAALPLGVSMYWCLIGKRREFALCFNRSANPEVVKQFPSLAAADHRWPLVTHFVGCKPCGKFRDYSVERCLKQMDRAFNFGDNQILQIYGFTHKSLASRRVKRIRNDTSNPLDVKDELGLLHPSFKAIKLSSSSSSDN
Length545
PositionTail
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.10
Grand average of hydropathy-0.036
Instability index41.94
Isoelectric point8.45
Molecular weight61257.09
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
extracellular region	GO:0005576	IEA:UniProtKB-KW

GO - Biological Function
hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	IEA:InterPro

GO - Biological Process
carbohydrate metabolic process	GO:0005975	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23373
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.01|      39|     216|     164|     203|       1
---------------------------------------------------------------------------
  164-  203 (70.83/36.53)	GTGIPYAF.APCLAYLLYGPLVAKALHSWVYEDGQRYsWCL
  382-  421 (66.18/30.71)	GVGVRLTFcPPVLGFIVFGEMRVDLVEAALPLGVSMY.WCL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.52|      31|      55|      27|      57|       3
---------------------------------------------------------------------------
   27-   57 (54.44/29.96)	GDDAPYRDPRLPIEARISDLLSRMTLAEKIG
   84-  114 (59.09/33.06)	GDSAPSPDWTPSMWADMVDGYQRAALSSRLG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23373 with Med16 domain of Kingdom Viridiplantae
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