<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23372

Description Luminal-binding protein 4
SequenceMDRSLRALIFLGLLLVGDIFSFANAKEEPSKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDGERLIGEAAKNQAAVNAERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSNQHQVRVEIESLYEGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRMLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYIYNMKNQINDKDKLADKLETEEKDKVEAAVKDALEWLDDNQNAEKDEYDEKLKEVEAVCNPIIAAVYQRSGGAPGGGSDGGDDDSHDEL
Length663
PositionUnknown
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.06
Grand average of hydropathy-0.462
Instability index27.13
Isoelectric point5.09
Molecular weight73107.02
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23372
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      69.88|      14|      31|      98|     111|       1
---------------------------------------------------------------------------
   75-   88 (22.07/10.92)	DGERLIGEAAKNQA
   98-  111 (23.53/12.08)	DVKRLIGRKFEDKE
  127-  140 (24.29/12.68)	DGKPYIQVKIKDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.57|      16|      21|     489|     504|       2
---------------------------------------------------------------------------
  489-  504 (30.33/15.83)	DLSGI...PPAPRGTPQIE
  510-  528 (22.23/ 9.88)	DANGIlnvKAEDKGTGKSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.90|      22|      32|     580|     602|       3
---------------------------------------------------------------------------
  580-  602 (32.27/23.00)	NQINDKDKlADKLETEEKDK.VEA
  609-  631 (34.63/20.19)	EWLDDNQN.AEKDEYDEKLKeVEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.44|      18|      20|     256|     273|       4
---------------------------------------------------------------------------
  229-  249 (18.79/ 7.55)	.LGGGTF..DVSILTIdngvFEVL
  256-  273 (35.31/19.91)	HLGGEDF..DQRIMEY....FIKL
  278-  292 (18.35/ 7.22)	H..GKDIskDNRALG.......KL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.80|      10|      20|     534|     545|       5
---------------------------------------------------------------------------
  534-  545 (13.06/12.36)	NDKGrlSQEEID
  557-  566 (16.75/ 8.35)	EDKK..VKEKID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.92|      29|     240|     393|     421|       6
---------------------------------------------------------------------------
  361-  394 (40.13/23.07)	DEI.VLVGGStripkVQQLLKDYFDGKEPNKGVNP
  395-  423 (45.86/27.42)	DEA.VAFGAA.....VQGSILSGEGGDETKDILLL
  424-  443 (17.94/ 6.22)	DVApLTLGIE.....TVGGVM.......TKLI...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      51.97|      11|      21|     310|     320|       7
---------------------------------------------------------------------------
  293-  303 (17.60/13.90)	RRECERAKRAL
  310-  320 (17.15/13.32)	RVEIESLYEGL
  328-  338 (17.21/13.39)	RARFEELNNDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23372 with Med37 domain of Kingdom Viridiplantae
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