<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23366

Description Uncharacterized protein
SequenceMELLYSMRRKPLKCEPPHFENALDTEVVRPIVTISVCNIIAFSSPTELSDADGDTWGGHVYVCDLDTPWDSHKVTSTVHPVSALEWDNEGKQLLVGTTAGDVSVYGQKEYLLNDWTCLYSASFPGEHIIRAIFFHNGRRVVAVDKKPDALITEKFQLLRSAPTLKGFGGSRSGGALVVSSSGLVGAIWGGDSSRALHAAEPLPPARLRVTTAALAHKSGGIVVAAGCGGSINGSNGGRWCVRCAVAKPRAPPHLALQPLPALYLPTAGDHPVTISWCLREDIDCLLVAGTTLTLWKLTEGAHPVHKLLSKGPLQGSTTPNGGPKTGSDCFNTVVLFYRGARWRRWLARSAAIVEVKQLSQWSVIGWVTKNLLSRAPPCFGRHVKPLVPAAFAVVSTHQSALGPRGGSWPNLPIPSIGKACPPAVGTLIG
Length429
PositionTail
OrganismChilo suppressalis (Asiatic rice borer moth)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Endopterygota> Lepidoptera> Glossata> Ditrysia> Pyraloidea> Crambidae> Crambinae> Chilo.
Aromaticity0.07
Grand average of hydropathy0.019
Instability index42.51
Isoelectric point9.13
Molecular weight45777.16
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23366
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.60|      19|      88|     311|     329|       1
---------------------------------------------------------------------------
  257-  277 (32.95/13.70)	QPLPALYLPTAGdhPVTISWC
  311-  329 (38.65/17.08)	GPLQGSTTPNGG..PKTGSDC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.26|      15|     123|     238|     252|       2
---------------------------------------------------------------------------
  238-  252 (32.82/17.74)	RWCVRCAVAK...PRAPP
  360-  377 (26.44/13.04)	QWSVIGWVTKnllSRAPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.32|      48|     129|      53|     106|       3
---------------------------------------------------------------------------
   53-  106 (74.62/51.42)	GDTWGGH.VYVCDLDTPWDSHKVTSTvhpVSALEWDNEGkqLLVGTTAGDvSVYG
  185-  233 (79.71/39.45)	GAIWGGDsSRALHAAEPLPPARLRVT...TAALAHKSGG..IVVAAGCGG.SING
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.56|      24|      47|     285|     309|       5
---------------------------------------------------------------------------
  285-  309 (37.44/21.39)	LLVAGTTLTLWkLTEGAHPVH.KLLS
  335-  359 (39.12/18.69)	LFYRGARWRRW.LARSAAIVEvKQLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23366 with Med16 domain of Kingdom Metazoa
Unable to open file!