<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23353

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMAAPVETPSVEVLQVTLNKSSLGESCIKTLADIKNQLRDLETQVVALNTPTNPMSLGNTGLLSLDPSPDKLPLYYQLLDCYTWTEKVHTYSTMMHSLLGSNNLKRTHIALSLSAKRRQFKVQYNHNVSQQQVDTVIQSINLMFQDMTLNVSRPFGNNAVIQVTLGRVLRAVVTFKGLLIEWVVVRAYNEPLLDEDGKVDLYTPSQYKVFQKVTDNANAAMLNFCSPGFSDLSVRSFFTWLHSFASLFTDVCKRCGNHLHNHMPPTWREFRTLDPFHEECKP
Length281
PositionTail
OrganismPenaeus vannamei (Whiteleg shrimp) (Litopenaeus vannamei)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Crustacea> Multicrustacea> Malacostraca> Eumalacostraca> Eucarida> Decapoda> Dendrobranchiata> Penaeoidea> Penaeidae> Penaeus.
Aromaticity0.09
Grand average of hydropathy-0.199
Instability index37.47
Isoelectric point7.67
Molecular weight31868.19
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23353
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.03|      14|      25|     238|     252|       1
---------------------------------------------------------------------------
  238-  252 (24.37/19.98)	TWlHSFASL..FTDVCK
  265-  280 (24.66/15.13)	TW.REFRTLdpFHEECK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.55|      28|      30|     124|     152|       2
---------------------------------------------------------------------------
  124-  152 (42.50/36.54)	NHNVSQQQVDTVIQSInLMFQDMTLN..VSR
  156-  185 (38.05/27.03)	NNAVIQVTLGRVLRAV.VTFKGLLIEwvVVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.95|      17|      28|     188|     204|       3
---------------------------------------------------------------------------
  188-  204 (30.34/20.59)	NEPLLD..EDGKVDLYTPS
  217-  235 (24.61/15.48)	NAAMLNfcSPGFSDLSVRS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23353 with Med27 domain of Kingdom Metazoa
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