<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23350

Description Uncharacterized protein
SequenceMFAGGDKIKREKASGVAAAEGAAIGVAAVATDAAVAAPGDATAASATPKPAYVLKDSKYRGVSKVSMKGVKKPFVSKLWQGSKYLQLGTFSSEIEAAHAYDKAALLHYGKGAQLNFPHMLESFIRPEVAFSVRPNNPSTAAVSSTTATPVLPTSAEHIPASSPGRGRGRGRGRGRGRGRGKRSQESPDVHGVTTSLDVKRRKTEGGSVPTPDQVKAKSSNIPAKKYLGVQVHRVYAHAQIHVNGKVVNLGTFATAKDAAIAYDKAALKYFGRPVDSCDAHHDDVVLNFPEKRDELLKQLIDEEKQNSARQVGGVPSVTGSSSRSGGSSYASRNAQNAKYNLSIMKLNSWVSKLQRSVKMVEASQRVQWGVPQHAPAISDEEQDDTVSITSLVKTEMFGSGPTIKTEFTTRDQKLRWSNAEIQDAVALMIEELKIYAADAPVDPLFQPPPRCAPILDLLSTSRYLKLISSINDLAHLKVKTDKNDPNSVVDGRFESKLQAVVDYRARLQMASSNEKQKLANFMRDLDVSSSGTSSGLNSVSDAGGGSGDAKVASQLSQASALLRNAKYVKRKVLISTPLNPTPVVQKDATPEKSSKEGLSESSKQGEPLDEEMKEASATTVSDNAGDVSVVDVKVEAPAADVKIEAPAADEENKSATTEAIANDNAATTAPIGPDEDLPANSTVTDMSEDQNEVEGGDTTNADAVAVDTILEASIEADATAHTEEETLKTTDELKHNGHEPKEGEPKDGNTTKITSLTTTAEEIKPTAEETSESKAAENKASTVEREPEAKKNDNDVAMEDAVASSSMDVAGPKEECEWQFYLAVQVTPIKGERLATGNIWRLLPLTKAGEFVEDVFLTEKEIEDMEVSEEEVCSSSAASDEKTPWMEHLRRLYVEENFVRQEIQRETNHQHALQGIVKIEQERLDQVSSVYRTAMKKLEAKTTLSQKNHVRVSQDALLVKLMQHSFNPILGDLLDQCEEALLNCFRKLSLRFEDFEQEFAYYRSALLNLTRSSDSSLAVQSTDPAIVVNSVADDNSVTIKRENIANVTGDISYTTSAASGDVVEIADGREVITYEIDELDELGDSSGLREAYITFYMGEMEALWKERSSSLEMVQAIQRALLNNTSVVEEPTKENQESVEPQERETPGGSEMKVEETEEIVQEFPEKEAESENKKGDSEDKAAECVEPSMVESDKKVDKTAEASEQKKDDNIAGEAKPATDTAKATTSYVNSEVVVKTEPKEVPGKFQREKELREAVESCLAQWERIQWPEELNSTFLTPTSLIESNSSSTVKTERIKSQSPTATDDQGIKLESAHSVMDELKRVMVDLTQDQVVPAPKSVEPTTLVVYHPVFINHQTPENHPECPERMNRVVNILNSLVKKHQETLKIDRLSMSPEELCPPETTLLMVHSPTYLRQLKERAIEAGSQSVSSPTASSPSSRALVFESDSGIREETPKAGRAKKNGRPPLVGAFAASSLEQNGVELDTFVSSKSWDVARAAAGTVCLAVDRVVRKEFHNAVCLVRPPGHHVGRHGRTETAPSSGFCLLNNVVIGATHARLYPWIRKIAVLDWDIHHGNGTEELLKDDPDAFFASIHLYSSGRYFPGTGKSCETGNRINVALENTGAGSGSQAFRSALETKVLPAMKKFRPDIIFISAGFDGHRDDILGGVAAVNNPNVPAGYVEEDFAWATLEVLKLAAEVCDGRVVSVLEGGYDVRRETNSLAKSVAAHVAAISAYEMARREAGDNVTVDVEMKEEEEVDKIAAGSTTHSITSTTTAIVKSEKLIKKEPAAFAESIILELCEAQAKLEPGQASDDALRLAIKNKLERVQTNLKLLRKLVPEFDGKTKPIENVNQTHRNLMLEYHWKNQVQDMGTKAQAVYLEQLGGSFPRLEMLGDPATLNEMMDYMMAKNRKLKFFKHAETTRGGRRVIKSIKCEINKEVTVHLSFCPPIPESGPNGESGVAASPMTPSTPTSPAFASGRLRSTRNKHKKQQQQLVKKKKGDMLTKAKLAAEEATKMEMEELKQRITEAREAIKEQELARAAGLQVTKYIQRLSIFPYNEQAPLGAWSESSHNLFRLVTLHGRKALGHFRKQHPETCFYHLFTWFGYYDKIYQTPCSFCKKLLTKESEEWAYLPPSFRDYANGQAFHSKCLPVE
Length2155
PositionTail
OrganismPhytophthora kernoviae
KingdomOomycetes
LineageEukaryota> Sar> Stramenopiles> Oomycota> Peronosporales> Peronosporaceae> Phytophthora.
Aromaticity0.06
Grand average of hydropathy-0.519
Instability index44.64
Isoelectric point5.57
Molecular weight236179.56
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
DNA binding	GO:0003677	IEA:UniProtKB-KW
DNA-binding transcription factor activity	GO:0003700	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23350
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     320.94|      99|     161|      10|     110|       1
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   10-  110 (157.85/104.22)	REKASGVAAAEGAAIGVAAVATDAAVAAPgdATAASATPKPAYVLKDSKYRGVSKVSMKGVKKPFV.SKLWQGSKYLQLGTFSSEIEAAHAYDKAALLHYGK
  173-  272 (163.09/101.66)	RGRGRGRGKRSQESPDVHGVTTSLDVKRR..KTEGGSVPTPDQVKAKSSNIPAKKYLGVQVHRVYAhAQIHVNGKVVNLGTFATAKDAAIAYDKAALKYFGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     508.25|     157|     162|     997|    1155|       2
---------------------------------------------------------------------------
  543-  611 (55.66/30.09)	........................................................................................GGGSG..DAKVASQLSQASAL........LRNAKYVKRkvlisTPLNPTPVVQ..KDATPEKSSKEGLSESSKQGEPLDEE
  997- 1155 (238.69/172.01)	QEFAyYRSALLNLTRSSDSSLAVQSTDPAIV.VNSVADDNSVTIKRENIANVTGDISYTTSAASGDVVEIaDGREVITYEIDEL.DELGDSSGLREAYITFYMGEMEAL.WKERSSSLEMVQAIQR.....ALLNNTSVVE..EPTKENQESVEPQERETPGGSEMKVE
 1162- 1313 (213.89/144.81)	QEFP.EKEAESENKKGDSEDKAAECVEPSMVeSDKKVDKTAEASEQKKDDNIAGEAKPATDTAKATTSYV.NSEVVVKTEPKEVpGKFQREKELREA.VESCLAQWERIqWPEELNS..............TFLTPTSLIEsnSSSTVKTERIKSQSPTATDDQGIKLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     209.04|      69|     396|     917|     995|       3
---------------------------------------------------------------------------
  917-  995 (94.63/94.44)	VKIEQerlDQVSsvyrTAMKKLEAKTTLSQK....NHVRVSQDALLVKLMQHSFNpILGDLLDQCEEALlnCFRKLSLRFEDF
 1327- 1399 (114.42/79.85)	VDLTQ...DQVV....PAPKSVEPTTLVVYHpvfiNHQTPENHPECPERMNRVVN.ILNSLVKKHQETL..KIDRLSMSPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.85|      34|      45|     715|     749|       5
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  715-  749 (52.68/35.39)	EADATAHTEEETLKTTDELKHNGHEPkEGEPKDGN
  762-  795 (53.17/31.28)	EIKPTAEETSESKAAENKASTVEREP.EAKKNDND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.40|      34|    1124|     623|     657|       6
---------------------------------------------------------------------------
  623-  657 (51.73/38.89)	NAGDVSVVDVKV.EAPAADvKIEAPAADEENKSATT
 1742- 1776 (52.67/34.79)	EAGDNVTVDVEMkEEEEVD.KIAAGSTTHSITSTTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     201.55|      64|    1124|     799|     869|       7
---------------------------------------------------------------------------
  799-  869 (96.86/71.96)	EDAVASSSMDVAGPKEEcewqfylAVQVTPIKGERLATGNIWRLLPLTKAGEFVEDVFLTEKEIEDMEVSE
 1959- 2022 (104.69/61.52)	ESGVAASPMTPSTPTSP.......AFASGRLRSTRNKHKKQQQQLVKKKKGDMLTKAKLAAEEATKMEMEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     122.20|      38|    1285|     133|     172|       8
---------------------------------------------------------------------------
  133-  172 (64.30/38.86)	RPNNPSTAAVSSTTATPvlPT.......SAEHIPASSPGRGRGRGRG
 1421- 1465 (57.90/29.69)	RAIEAGSQSVSSPTASS..PSsralvfeSDSGIREETPKAGRAKKNG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23350 with Med27 domain of Kingdom Oomycetes
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