<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23336

Description Uncharacterized protein (Fragment)
SequenceMAAAAPQQQQQQLAQAPAQGAPPAAPGVPPGQQPPAQASAAAGAAQLQAPSGLQVAAQAQDFDPVQRFRQLLPQLKESLQNLMKVAAQNFVQNTNIDSGQKSTDGPVQRVDKTLEEFYALCDQLELCLRLAYECLSQSFDSA
Length142
PositionTail
OrganismParoedura picta
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Lepidosauria> Squamata> Bifurcata> Gekkota> Gekkonidae> Gekkoninae> Paroedura.
Aromaticity0.05
Grand average of hydropathy-0.368
Instability index74.08
Isoelectric point4.55
Molecular weight15042.69
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23336
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.08|      12|      40|      64|      75|       2
---------------------------------------------------------------------------
   64-   75 (22.03/12.71)	PVQRFRQLLPQL
  106-  117 (21.05/11.91)	PVQRVDKTLEEF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.14|      10|      75|      46|      63|       3
---------------------------------------------------------------------------
   29-   38 (21.81/ 7.04)	PPGQQPPAQA
   50-   59 (18.32/ 6.58)	PSGLQVAAQA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23336 with Med29 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MAAAAPQQQQQQLAQAPAQGAPPAAPGVPPGQQPPAQASAAAGA
1
44










Molecular Recognition Features






MoRF SequenceStartStop




1) MAAAAPQQQQQQLAQAPAQG
2) PAQASAAAGAAQLQAPSGLQVA
3) VQRFRQLL
1
35
65
20
56
72