<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23334

Description Uncharacterized protein (Fragment)
SequencePFQFCYSMILYVGKRNLIFLICWNSKEDKDFQMQTWSQWEEGRGWPRQSIPHLLMNYPIAHRACFSSHSPRAADRENAPLLKSAENANIQPNPGLILRAEPTVTNILKTMDSDHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFAQKFIKLNEFTKQINLEGSKAASVRALLFDISFLMLCHVAQTYGSEVIVGEAGPPGEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTKVESLVALLNNASEMKLVQMKWQEACLSISAAILEILNAWENGVLTFESVQKITDNIKGKVCSMAVCAVAWLVAHVRMLGLDEREKSLQMIRQLATPLFGENTLQFYSERVVIMSSILEHMCADVLQQTAAQVKFPSTGVDTMPYWNLLPAKKPIKEVLTSVFSKVLEKGWVDSRSIHIFDTLLHMGGVYWFCNNLVKELLKETRKEHAIRAVELLYSIFCLDMQQLTLTLLGHILPNLLTDSSKWHMLMDPPGKALAKLSVWCASSSYSSHNRGQASAWQRKRHREDIEDYISLFPLDDTQPSKLMRLLSSNEEDTSILSSPTDRTMSSSLSASQLHTVSMRDPLNRVLANLFLLISSILGAKTAGTHTQFVQWFMEECVDCLEQGSRGNILQFMPFAMVSELVKASTMSSPKIVLAITDLSLPLGRRVAAKAISAL
Length676
PositionTail
OrganismParoedura picta
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Euteleostomi> Lepidosauria> Squamata> Bifurcata> Gekkota> Gekkonidae> Gekkoninae> Paroedura.
Aromaticity0.08
Grand average of hydropathy-0.014
Instability index44.25
Isoelectric point7.12
Molecular weight75584.95
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23334
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.56|      17|      23|     548|     564|       4
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  548-  564 (27.70/18.94)	LSSNEEDTSILSSPTDR
  570-  586 (28.86/20.05)	LSASQLHTVSMRDPLNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.16|      23|      23|      73|      95|       5
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   73-   95 (37.98/26.06)	ADRENAPLLKSAENANIQPNPGL
   99-  121 (38.19/26.25)	AEPTVTNILKTMDSDHSKSPEGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.73|      30|     363|      23|      54|       6
---------------------------------------------------------------------------
   23-   54 (52.08/41.49)	WN....SKEDKDFQMQTWSQWEEgRGW.PRQSIpHLL
  384-  418 (44.65/25.98)	WNllpaKKPIKEVLTSVFSKVLE.KGWvDSRSI.HIF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23334 with Med24 domain of Kingdom Metazoa
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