<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23332

Description Uncharacterized protein
SequenceMASSLTGMFSHPPQNPPPPPPPPPGPGPGPGPQGAAAVGLTAAPARPPSTLVDELEASFEACFASLVSQDYVNGTDQEEIRTGVEQCIQRFLDVARQTECFFLQKRLQLAVQKPEQVIKEDVSELKNELQRKEALIQKHLSKLRHWQQVLEDINVQPKKSDLAQGPLAYLEQASANIPAPLKQT
Length184
PositionHead
OrganismChiloscyllium punctatum (Brownbanded bambooshark) (Hemiscyllium punctatum)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Chondrichthyes> Elasmobranchii> Galeomorphii> Galeoidea> Orectolobiformes> Hemiscylliidae> Chiloscyllium.
Aromaticity0.05
Grand average of hydropathy-0.488
Instability index57.45
Isoelectric point5.42
Molecular weight20058.57
Publications
PubMed=30297745

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23332
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.27|      24|      30|      77|     106|       1
---------------------------------------------------------------------------
   81-  106 (38.68/42.17)	RTGV...EQCIQRflDVAR.....QTECFFLQKR
  108-  139 (27.59/13.34)	QLAVqkpEQVIKE..DVSElknelQRKEALIQKH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.52|      12|      32|       2|      13|       2
---------------------------------------------------------------------------
    2-   13 (23.54/13.55)	ASSLTGMFSHPP
   37-   48 (21.99/12.22)	AVGLTAAPARPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23332 with Med28 domain of Kingdom Metazoa
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