<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23330

Description Uncharacterized protein
SequenceMADTLSVGINLDAFAHAINAIQQLRSSVTRVFDTLKDGMKNKESLEGREKAFISDFQENLHAVNRDLNELERLSNLVGRPSESHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYHAGLASSLLNQQSLKRSAMQMGVSAKRRPKVQPTTLALPPQYVDDVIARIDRMFPDMSIHLSRPNGSSAVLLVTLGKVLKAIVVMRSLFIDRTIVKAYNENVYAEDGKLDIWSKSNYQVFQKVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQATCQRCGKFLQDGLPPTWRDFRTLEAFHDTCRQ
Length311
PositionTail
OrganismChiloscyllium punctatum (Brownbanded bambooshark) (Hemiscyllium punctatum)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Chondrichthyes> Elasmobranchii> Galeomorphii> Galeoidea> Orectolobiformes> Hemiscylliidae> Chiloscyllium.
Aromaticity0.08
Grand average of hydropathy-0.306
Instability index40.39
Isoelectric point9.35
Molecular weight35347.20
Publications
PubMed=30297745

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23330
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.47|      32|      32|     147|     178|       1
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  147-  178 (56.30/35.93)	RPKVQPTTLALPPQYVDDVIARIDRMFPDMSI
  182-  213 (50.17/31.36)	RPNGSSAVLLVTLGKVLKAIVVMRSLFIDRTI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.03|      15|      25|     268|     283|       2
---------------------------------------------------------------------------
  268-  283 (25.96/20.84)	TWlRSYIKL..FQATCQR
  295-  311 (27.06/16.77)	TW.RDFRTLeaFHDTCRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.06|      21|      30|      74|      94|       3
---------------------------------------------------------------------------
   74-   94 (37.09/25.49)	SNLVGRPSESHPLH.NSGLL.SL
  105-  127 (27.97/17.49)	SQLLQAYKWSNKLQyHAGLAsSL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23330 with Med27 domain of Kingdom Metazoa
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