<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23329
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDIAYVCEWEKRPKSNYCPSVLLVCAWSCRNLVAFTTDLKNEEEQDLTYMIHILDTEHPWDVYSINSGHHEVITSLEWDQSGSRLLSADADGQVKCWSMTDHLVNSWDNIVGSSVDGDPIVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPSGQVLTATESLSRLRSRVALADIAFTGGGNIVVTTSDGSSSSPVQFYKVCVSVVNEKCKIDTELLPSLFMRCTTDTARKEKYPAVTHLKFLTRETSEQVLLCASSLTGSIVECWSLRKEGLPVNNIFQPISPVGDKQPSILKWRILSATNDLDRVTAVGLPKLPISLTSTDLKVATDTKFFPGLGLALAFHDGTIHIVHRLSLQTMGVFYSTPSQRPTDDQTIKRQRTTASSVHFKALQLSWTSLALVGIDNHGKLSMLRISPSMGHTLDMNTSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYTRQNQALQQVLSTRIVAMKASLCKLSTNTLARACDFHAKLLLIAIGSTLKSLLRPHLLNTPDKSPGERLTEICCKNTDIDIDKVMINLKTEEFVLDAWVLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGFSFLRDGTSLGMLRELMVVIRIWGLLKPGCLPIYTATSDTQDSMSLLFRLLTKLWLCCRDENHITEPDDNLIDECCLLPSQLLVPSMDWLPVNDGIIGKLQSKQLLKLQFGKPISVPSHFATSQLDIFARSPGYQKMDNLRRLSLGVCPTEETKSCTRCGCNTMLKSPNKSTAVKQWEQRWIKNCLCGGLWRKVSISLS |
Length | 829 |
Position | Tail |
Organism | Chiloscyllium punctatum (Brownbanded bambooshark) (Hemiscyllium punctatum) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Chondrichthyes>
Elasmobranchii> Galeomorphii> Galeoidea> Orectolobiformes> Hemiscylliidae>
Chiloscyllium.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.028 |
Instability index | 44.44 |
Isoelectric point | 7.90 |
Molecular weight | 92458.02 |
Publications | PubMed=30297745
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
|
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP23329
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 119.66| 40| 97| 417| 463| 1
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417- 463 (58.60/49.28) VHFKA..LQLSWTSLAlVGIDNHGKLSMLRIspsmGHTLdmNTSLR.HLL
515- 557 (61.06/32.45) VAMKAslCKLSTNTLA.RACDFHAKLLLIAI....GSTL..KSLLRpHLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 276.83| 104| 348| 294| 407| 2
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94- 125 (22.76/ 6.26) VKCWSM.TDHL.VNSWDNIVGSSVDGDPIVaLSW...........................................................................................................................................................................
215- 290 (98.18/62.62) ..................................lhngvklalhveksgasnfgekfsrvkfspsltlfggkpmegwiavtisglvtvsllkpsgqvltateslsrlrsrvaladiaftgggnIVVTTSDGSSSSPVQFYKVCVSVVNEKCKI..DTELLPSLFMrctTDTARKEKYPAVTHLKFLTR....ETSEQVLLCASSL
295- 407 (155.89/138.88) VECWSLrKEGLpVNNIFQPISPVGDKQPSI.LKW........................................................................................rILSATNDLDRVTAVGLPKLPISLTSTDLKVatDTKFFPGLGL...ALAFHDGTIHIVHRLSLQTMgvfySTPSQRPTDDQTI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 143.17| 44| 84| 620| 668| 3
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620- 668 (68.90/64.20) LPNQgsPVRPGFSFL..RDGTsLGMLRELMVVIRIWGllKPGCLPIYTATS
708- 753 (74.27/50.62) LPSQ..LLVPSMDWLpvNDGI.IGKLQSKQLLKLQFG..KPISVPSHFATS
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