<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23327

Description Uncharacterized protein
SequenceMKVVNLRQAILQAWKERWTDYQWAINMKKLFPKGPTWDLLGLSDHLLEQALVGPSPNPLIMSYLKYAISSQMVSYASVMTAIGKFEDYSRELCVKALLELMDMFCDRLSCHGKAEECISLCRSLLSTLAWLLRCAAYCTERLKEGSDAAPGEEQLQLCINQIEKTVNRRKNRALLHIARLEEQVTWTNMEQALIKLTENHSKISNQQLRLRLEECIELVKSIPVITTQSEQNTKMEFPTVHALIMLEGTLNLTSDTQSLVEQLIMVKRMQRIPSPHFLLEIWKACFVGLIESPEGTEELKWTAFTFLKIPQALLKLKKYPLGDKDFTDDVNTAFEFLLKLTPLLDKADQRCNCDCVSLLLQECGKLGLLSDGNMENLVNKRTADRELAPQLKSAENASIQPNPGLILRAEPTVTNILKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFVKLNEFAKHISGEGSKAASVRALLFDISFLMLCHVAQTYGSDVILSEPSTSGEVVFFETWMLTCMPEEGKILNPEQGFRADPTKVELLVSHLNSSTEMKLVQVKWHEVCSCTPAAILEVLNAWEHGLLTFEAVQKITDNIKGKICSMAICAVAWLVAHVRMLGLEEREKPLQMICQLVTPLYAENTLQFYNERVVIMSLILEQMCADVLQQTATSINFPSANLDPIPYRNLLPVKKPIKEVLINNFNDILNKGWVDSRSIHVFEALLHMGGVYWFCNNLVKELLKETRKEHCYKAVELLHSVFCLDMQQITLGLLGHILPGLLTNSLKWQMLMDPPGRALAKLSVWCALSAHSSHNKSQATAKQRKRHREDIEDYINLFPLDDSQPSKLLRLLSSNEEDPNILSSPGDRTMSSSLSASQLHNINMRDPLNRVLANLFLLISSILSSKVAGPHTQFVQWFMEECVECLDQGSRGSVLQFMPFTMVSELVKLPAMSKPKTVLAITDLGLPLGRRVAAKAIAAL
Length985
PositionTail
OrganismScyliorhinus torazame (Cloudy catshark)
KingdomMetazoa
LineageEukaryota> Metazoa> Chordata> Craniata> Vertebrata> Chondrichthyes> Elasmobranchii> Galeomorphii> Galeoidea> Carcharhiniformes> Scyliorhinidae> Scyliorhinus.
Aromaticity0.06
Grand average of hydropathy-0.016
Instability index46.73
Isoelectric point6.68
Molecular weight110562.92
Publications
PubMed=30297745

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23327
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.86|      22|      29|     293|     315|       1
---------------------------------------------------------------------------
  293-  315 (34.91/38.05)	PEG....TEELKwTAFTFL.KIPQALLK
  320-  346 (29.95/23.49)	PLGdkdfTDDVN.TAFEFLlKLTPLLDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.73|      12|      17|     707|     718|       2
---------------------------------------------------------------------------
  707-  718 (23.76/15.33)	INNFNDILNKG...W
  724-  738 (18.97/10.78)	IHVFEALLHMGgvyW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     258.07|      66|     330|     413|     481|       3
---------------------------------------------------------------------------
   47-   91 (47.13/19.75)	..........................................LEQALVGPSPNPLIMSylkYAISSQMVSYASVMTAIGKFEDY.....SRE
   94-  148 (73.82/34.37)	VKALLELMDmfCDrlscHG..KAEE.C............ISLCRSLLSTLAW.LLRCA...AYCTERLK..................EGSDA
  413-  481 (104.64/57.12)	VTNILKTMD..AD....HS..KSPEGL............LGVLGHMLSGKSLDLLLAA...AAATGKLKSFARKFVKLNEFAKHisgEGSKA
  744-  792 (32.49/11.07)	VKELLKETR..KE....H.cyKAVELLhsvfcldmqqitLGLLGHILPG....LL.........TNSLK.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.29|      20|      30|     162|     182|       5
---------------------------------------------------------------------------
  162-  182 (29.03/22.97)	IEKTVNRRK.NRALLHIaRLEE
  194-  214 (29.27/18.11)	IKLTENHSKiSNQQLRL.RLEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.30|      20|      29|     608|     631|       7
---------------------------------------------------------------------------
  608-  631 (30.89/25.16)	ICSMaicaVAWLVAHVRMLGLEER
  638-  657 (36.42/19.57)	ICQL....VTPLYAENTLQFYNER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23327 with Med24 domain of Kingdom Metazoa
Unable to open file!