<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23325
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDVAYVCEWEKRPKSNYCPSVPLVCAWSCRNLVAFSTDLKNEEEQELTYMIHILDTEHPWDVYSINSGHHEVITSLEWDQSGSRLLSADADGRVKCWSMTDHLVNSWDNIVGSSVDGDPIVALSWLHNGVKLALHVEKSGASNFGEKFSRVKFSPSLTLFGGKPMEGWIAVTISGLVTVSLLKPSGQVLTATESLSRLRSRVALADIAFTGGGNIVVTTSDGSSSSPVQFYKVCVSVVNEKCKIDTELLPSLFMRCTTDTARKEKYPAVTHLKFLTRETSEQVLLCASSLTGSIVECWSLRKEGLPVNNIFQPISPVGDKQPSILKWRILSATNDMDRVTAVGLPKLPISLTSTDLKVATDTKFFPGLGLALAFHDGTIHIVHRLSLQTMGVFYSTPSQRPTDDQAIKRQRTTACSVHFKALQLSWTSLALVGIDNHGKLSMLRISPSMGHTLDMNTSLRHLLFLLEYCMVTGYDWWDILLHVQPNMVQNLVEKLHEEYTRQNQALQQVLSTRIVAMKASLCKLSTNTLARACDFHAKLLLIAIGSTLKSLLRPHLLNTPDKSPGERLTEICCKNTDTDIDKVMINLKTEEFVLDAWVLQSLQQLIQWVGDFVLYLLASLPNQGSPVRPGFSFLRDGTSLGMLRELMVVIRIWGLLKPGCLPIYTATSDTQDSMSLLFRLLTKLWLCCRDENHITEPDDNLIDECCLLPSQLLVPSMDWLPVNDGIIGKLQSKQLLKLQFGKPVSVPSHFATSQLDIFARSPGYQKMDNLRRLNLGVCPTEETKSCTRCGCNTMLKSPNKSTAVKQWEQRWIKNCLCGGLWRKVPISLF |
Length | 829 |
Position | Tail |
Organism | Scyliorhinus torazame (Cloudy catshark) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Chordata> Craniata> Vertebrata> Chondrichthyes>
Elasmobranchii> Galeomorphii> Galeoidea> Carcharhiniformes> Scyliorhinidae>
Scyliorhinus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.038 |
Instability index | 45.34 |
Isoelectric point | 8.03 |
Molecular weight | 92531.16 |
Publications | PubMed=30297745
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
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GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | catalytic activity GO:0003824 IEA:InterPro
|
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP23325
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 262.76| 71| 92| 185| 259| 1
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81- 125 (46.83/23.49) SGSRLLSADADGR....VKCWSMTDHL..VNswdNIVGSSVD.G..DPIVaLSW..........................
185- 257 (106.32/79.07) SGQVLTATESLSRlRSRVALADIAFTG..GG...NIVVTTSD.GSSSSPV.QFYKVcVSVVNEKCKIDTELLPSLFMRCT
280- 352 (109.60/69.32) SEQVLLCASSLT..GSIVECWSLRKEGlpVN...NIFQPISPvGDKQPSI.LKWRI.LSATNDMDRVTAVGLPKLPISLT
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 159.72| 54| 316| 401| 462| 2
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401- 462 (77.72/71.87) PTDDQAIKrQRTTACSVHFKA..LQLSWTSLAlVGIDNHGKLSMLrispSMGHTLdmNTSLR.HL
500- 556 (82.01/50.49) TRQNQALQ.QVLSTRIVAMKAslCKLSTNTLA.RACDFHAKLLLI....AIGSTL..KSLLRpHL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 143.05| 44| 84| 620| 668| 3
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620- 668 (68.90/60.83) LPNQgsPVRPGFSFL..RDGTsLGMLRELMVVIRIWGllKPGCLPIYTATS
708- 753 (74.15/47.86) LPSQ..LLVPSMDWLpvNDGI.IGKLQSKQLLKLQFG..KPVSVPSHFATS
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