<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23310

Description U-box domain-containing protein 35
SequenceMWRGRHPKDSREAGRQLVAVAVTDSRSSQSAVKWAADNLISKGQVFLLLHVRRTMTSIPTPCKDSSTHFSLAGQQIPLSEVDEDVASAFIEEMNQQTKDLLLPFQCLCSRRGLQCKEVILEENDAAKAITDYVTYALVDKLVLGATSRNAFTRAFKQADVPTSVLKIAPDFCSVYIISKGKLSSVREASSPNRHPAMKQLTSKFESSRDSFQSTKSDPYSMRTDMEDFGKSPFMRGARNYDDLVSERFSRFGKDGECPDFSYQSATSCPSPTRSLIEHPSYHARQGHVDSGAQQSTWFFHHDEQLRSLQSSRSGGSHDDQMRSPKSSRSSGPSRSNGSGSGISSIGQLPSGSGTTDADGDSCSSNSLDDMDSEMGKIKLELRQKIAIYNGTCQGTLNMRARNHYLRPAKQEHGSEETRSSEEMAVEKPIRAVPELTQASKDVANSEETRGEAQRKYVLDEEEKKKKFLESMSKDIRYRRYTLKEIEKATNNFSEELKIGEGGYGPVFKATLDHTLVAVKILRSNVSQGMKQFQQEIEVLSCIRHPNMVLLMGACPESGCLVYEHMANGSLEDRLFCKDNTPPLSWQLRFKIAGEIATGLLFLHQNKPEPLVHRDLKPGNILLDKNFVSKIADVGLARLIPPSVADAVTQYRMTAAAGTFCYIDPEYQKTGMLGIKSDVYALGIILLQLITGRAPMGLAHNIEMAIEDNALEKMLDPKVPDWPMEETMKFAELALRCVELRCKDRPGLGTVVLPELNRMREFAEQV
Length765
PositionTail
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.07
Grand average of hydropathy-0.499
Instability index51.98
Isoelectric point6.83
Molecular weight85174.68
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23310
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.18|      15|      15|     301|     315|       1
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  301-  315 (29.71/19.95)	HDEQLRSLQSSRSGG
  317-  331 (30.48/20.68)	HDDQMRSPKSSRSSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.77|      21|      30|     398|     418|       2
---------------------------------------------------------------------------
  398-  418 (38.44/23.09)	MRARNHYLRPAKQEHGSEETR
  429-  449 (34.33/19.93)	IRAVPELTQASKDVANSEETR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     377.49|     118|     321|     140|     263|       3
---------------------------------------------------------------------------
  140-  263 (189.81/132.54)	KLVLGATSRNAFTRAFKQADVPtsvlKIAPDFCSVYIISKGKLSSVREASSPNRHPAMKQLTSKFESSRDSFQSTKSDPYSMR.TDMEDF.GKSPfMRGARNYDDLVSERF.SR.FGKDgECPDFSYQ
  465-  586 (187.68/114.65)	KKFLESMSKDIRYRRYTLKEIE....KATNNFSEELKIGEGGYGPVFKATLDHTLVAVKILRSNVSQGMKQFQQEIEVLSCIRhPNMVLLmGACP.ESGCLVYEHMANGSLeDRlFCKD.NTPPLSWQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23310 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FFHHDEQLRSLQSSRSGGSHDDQMRSPKSSRSSGPSRSNGSGSGISSIGQLPSGSGTTDADGDSCSSNSLDDMDSEMGK
2) LNMRARNHYLRPAKQEHGSEETRSSEEMAVEKPIRAVPELTQASKDVANSEETRGEAQRKY
298
396
376
456










Molecular Recognition Features






MoRF SequenceStartStop




1) MWRGRH
1
6