<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23306

Description Heat shock cognate protein 2-like protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQNDMKLWPFKVIAGPGDKPMIVVQYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRSLRRLRTSCERAKRTLSSTAQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSIHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVAPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIGSKLAPADKKKIEDAIDQAIQWLDSNQLAEADEFEDKMKELEGLCNPIIAKMYQGAGADMDAGMEEDGPSVGGSTGAGAGAGPKIEEVD
Length653
PositionUnknown
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.06
Grand average of hydropathy-0.395
Instability index32.73
Isoelectric point5.14
Molecular weight71511.27
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23306
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     260.22|      81|     289|     148|     354|       1
---------------------------------------------------------------------------
  274-  354 (136.97/268.85)	ERAKRTLSSTAQTTIE..IDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLR..DAKMDKSSIHDVVLVGGSTRI.....PKVQQ
  562-  651 (123.25/43.71)	EKIGSKLAPADKKKIEdaIDQAIQWLDSNQLAEADEFEDKMKELEGLCNPIIAKMYQgaGADMDAGMEEDGPSVGGSTGAgagagPKIEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.90|      45|     189|     170|     218|       2
---------------------------------------------------------------------------
  170-  218 (62.54/50.44)	GLNVMRIINePTaAAIAYGLDKKATSV.GEKNVLIFDLggGTFDVSLLTI
  362-  407 (71.36/42.03)	GKELCKSIN.PD.EAVAYGAAVQAAILsGEGNEKVQDL..LLLDVAPLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.00|      18|      21|      38|      55|       3
---------------------------------------------------------------------------
   16-   33 (19.07/10.24)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.65/22.56)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.28/14.97)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.02|      42|      46|     426|     468|       4
---------------------------------------------------------------------------
  426-  468 (66.95/41.63)	IPTKKE...QVFSTYSDNQPGVLiQVYEGERTRTRDNNLL...GKFELS
  470-  517 (61.08/33.84)	IPPAPRgvpQITVCFDIDANGIL.NVSAEDKTTGQKNKITitnDKGRLS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23306 with Med37 domain of Kingdom Viridiplantae
Unable to open file!