<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23305

Description Heat shock cognate protein 70-1
SequenceMTNGGPCKFKNLQSRWKQKNPEPARKENNKGSPILKPHSSRPSHSHLTAEEQQNLPETSTMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDPSVQNDIKLWPFKVIAGPGDKPLIVVQYKGEEKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKYKSEDEEHKKKVEAKNSLENYAYNMRNTIKDEKIGAKLAAADKKKIEDAIEQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGGDMPPGMDEDGPSVGGGGGAGPKIEEVD
Length709
PositionUnknown
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.06
Grand average of hydropathy-0.505
Instability index39.00
Isoelectric point5.57
Molecular weight77903.34
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23305
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.74|      20|      41|     397|     416|       1
---------------------------------------------------------------------------
  397-  416 (33.77/20.00)	VHDVVLVGGSTRIP.KVQQLL
  441-  458 (26.49/14.26)	VQAAILSGEGNE...KVQDLL
  474-  494 (27.48/15.04)	GVMTVLIPRNTTIPtKKEQIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.00|      18|      21|      98|     115|       3
---------------------------------------------------------------------------
   76-   93 (19.07/11.55)	....TTYSCVGVWQHDRveIIA
   98-  115 (32.65/25.34)	NR..TTPSYVAFTDTER..LIG
  120-  138 (24.28/16.84)	NQvaMNPINTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     129.15|      42|      45|     588|     630|       4
---------------------------------------------------------------------------
  571-  596 (28.15/16.56)	.................NDKGRLSK.EEIEKLVQEAEKYKSEDE
  597-  639 (60.26/52.03)	EHKKKVEAKNSLENyAYNMRNTIKD.EKIGAKLAAADKKKIEDA
  641-  674 (40.74/28.22)	EQAIQWLDSNQLAE.ADEFEDKMKElESICNPIIA.........
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23305 with Med37 domain of Kingdom Viridiplantae
Unable to open file!