<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23301

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMEHMYSAFCASSRESNTQRFAEWLCDNKCLTSVSSSNLLAFTSLTDLKEIEPKTQSINVYVIDLNIPNTPHLVTTHTEDITALEWDTVGSKLLIGDSLGTVYIWSMKNHLINDWHLFYSHSAFFGERILAASWFHNGNKLGINAEKKDLILPYTDKFTTMKFSPSVRQFGGKPASGCLCISSSGLVSCLVLLSDGSCVTGEETLGHFRAKLKVIDICYAKNGDFLVVTSNGSINSSINCYRVAVKICNSHEKNKCTITCQPFSSFYLECSTIEGNKLITHLKFVLKEAAEAVVVAVSGIMGSTVELWELREKPVSLHKMFQMKGNEFAALQSKTCIVWQHHASINHNHGVVAIATPRLSLFDVNPPLSYIVVAFRDNIIKCYYRENLQQVCSVNMSPVNPVETTKSFNLHKTSSTANVTSIVDMQFTYSGCALIAMDTASQIFVYRMSPITDPGNAFSASSIQTLLEYCLITGNDWWDIILSLRPNIIENVCDKLSEGFLQKQPSGVQQKWMSRFLAIKASLYRCLNIGNTGQVKSGDCYALIMLNAISNLLKSLLRVRDNQEKDGPAETLSALMQSRNNEAQYMNLNKVLLCLEHKEFLVEIQILQSLQHLNQWVGDTTLFLLASLPQQIHNHYLFPGGGLIFDAKSVNTLRELLVLIRIWGLLNEKCLPVFTKLTSDDADVIELLFKLLTKTVLSIGSEPDESLLDECCLLPNQVLIPQLDFTLKAIGVASPALFTNPHPLTFEYYNEAPFLKYNVKSFTLNGAVMCNTGCKIDAVRHISLGNLCNESSNVRSCTRCVAVSLIQSIYKSPAHGITSRAWDQRWFKNCICGGNWKLGLP
Length840
PositionTail
OrganismDinothrombium tinctorium
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Chelicerata> Arachnida> Acari> Acariformes> Trombidiformes> Prostigmata> Anystina> Parasitengona> Trombidioidea> Trombidiidae> Dinothrombium.
Aromaticity0.09
Grand average of hydropathy0.048
Instability index41.61
Isoelectric point7.05
Molecular weight93642.02
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23301
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.28|      51|     278|     317|     375|       1
---------------------------------------------------------------------------
  317-  375 (81.54/66.60)	HKMFQMkgnEFAALQS.KTCIVWQHH......ASIN...HNHGVVaiatPRLSL.FD...VNpPLSYIVVAFR
  596-  660 (68.74/38.59)	HKEFLV...EIQILQSlQHLNQWVGDttlfllASLPqqiHNHYLF....PGGGLiFDaksVN.TLRELLVLIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.25|      13|      14|     493|     505|       2
---------------------------------------------------------------------------
  493-  505 (22.28/13.55)	DKLSEGFLQKQPS
  509-  521 (22.97/14.17)	QKWMSRFLAIKAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.12|      15|      20|     247|     262|       3
---------------------------------------------------------------------------
  247-  262 (26.29/21.41)	CNSHEKNKcTITCQPF
  269-  283 (27.84/16.33)	CSTIEGNK.LITHLKF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23301 with Med16 domain of Kingdom Metazoa
Unable to open file!