<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23298

Description Mediator of RNA polymerase II transcription subunit 6
SequenceMAATPIPASGNPNFEGNPAAPAPPGTDMTGICFSDQLWLKTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGNEYILSEVMEPHLFVIRKQKRESPEKVTPMFTYYILDGSIYQAPQLCNVFASRIARALYHISKAFTTAASKLEKTGFVDSESESASLEPKIGKEMIDYKDVKRVDHILAALQRKLPPTPPPPPFPEGYVPPATSEQEKGPEAQQQSEPQLPPLDPIIDQGPSKRLRY
Length253
PositionHead
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.09
Grand average of hydropathy-0.488
Instability index63.35
Isoelectric point5.65
Molecular weight28414.10
Publications
PubMed=30626928

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364143
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP23298
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.08|      20|      30|      24|      45|       1
---------------------------------------------------------------------------
   24-   45 (36.65/31.18)	PGTDMTgiCFSDQLWLKT.YPLD
   57-   77 (38.43/25.45)	PFYDWT..CNNEQLRMRSiHPLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.23|      15|      19|     212|     226|       2
---------------------------------------------------------------------------
  212-  226 (27.97/12.34)	EGYVPPATSEQEKGP
  233-  247 (29.26/13.20)	EPQLPPLDPIIDQGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23298 with Med6 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AALQRKLPPTPPPPPFPEGYVPPATSEQEKGPEAQQQSEPQLPPLDPIIDQGPSKRL
195
251










Molecular Recognition Features






MoRF SequenceStartStop




1) KRVDHILAALQRKL
2) LPPLDPIIDQGPSKRLRY
188
236
201
253