<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23294

Description Mediator of RNA polymerase II transcription subunit 33A-like protein
SequenceMGSESSDFEQRVLGTVKSSQERRDPPLIWAMEVSKCIQEKGLGIPNPELGHVLVSNLCFTNNNPTLWKFVEQGICSRLLSPLHVLALLTSRVIPHRQSQPEAYRLYLELLSRYAFSFPPIGTDMCKEEIVKSVDDALQLSQKFGIRVSEVGHAVVLFLFRAIISLIDCTLEDWGLQSSSMDKQCSTYGNGGHQDMDIDAMGNSNDKRHEHRENLRRMNAFMALEVVERLIGNKKAMVLLRLVHLNMPAKFNGLLQRLQFLEANKSTSSNIKSASYLLVRLTANVQRALRWEYKLSKHQIVGVLIDIGSCSFSSFHNFGAGQAACWLAFDMYMENAMDGRHLPAKSAVDILAELTKSLQVVNQASWQETFLALWISALRLMQRERDPMEGPVPHLDARLCALLSITPLTIVRVVEEDGEMSSVRSSGGPGNVVTGYNHGMEGNEYSSRRRGLIAALQILGQFSGLLVPPASVVAAANSAAARAATFISSFKNGNDGFKGVNHGDTSVKAVGNMRHLIVEACIARKLIDTSAYFWPGYVAVSATSLTDSSLVQVSPWSTFMEGSQLTDALKNALIATPASSLMELQRLYHFAINGSEEEQAAAAKILCGASLTHGWNIEEHVVHFAVKFLSPPVPPEFSGPGSHLVAYMSMLNVILFGLSSSDIVHVLSLYGVVPEVAAALMPICEAFGSLMPTSNSKSSTNDEPSAYTVFSCAFLFLLRLWKFYRPSHDHCIMGPGGSNGSAITLEYLLLLRNSRIASHNSTPASNNATNPLDVSQLRPVYIDSFPKLRAWYSLNQACIASTLSGLCNGNPVLQVANKIVSIIYWKMTKSGTASGNSSTPSSGNISGSPASSGDEAYQRPVLPAWEILEAIPFVLEALLTACAHGRLSPRDLTTGLKDLVDFLPASLVAIVSYFSAELTRGIWKPVSMNGIDWPSPAANLLLIESEIQEILASAGVNAPSCHPGGISPVMLPLPMAAMVSLTITFKLDKSLEYIHGVAGTALENCGSACPWPSMPIIGALWAQKVRRWHDFIVSSCCRSVVKQDEEAIGQLLRSCFATFLGSPHVSSTPGGVTGLLGHNVGGHSPRVRLAPGFLYLRTCRDFHNVQFVNDVILELVAESARKSAVGWAPGQARLKSGRASLAGAAARAKEVAMLGASLVLAAGGPQLVQLLYQETMPTWLLSSREWKVGVVSGPGSCIMEGYAMAYLLVLSGTFAWGIGGNMTKALSRWGRVVGIHMDFMAGVLEGNISLGCNPATWKAYLSSFVGLVVSFAPAWILELKPETLRKLATGLRGWHESELALALLERGGEAAMSSVAEMFM
Length1319
PositionTail
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.08
Grand average of hydropathy0.131
Instability index47.07
Isoelectric point7.19
Molecular weight142874.11
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23294
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.94|      38|     408|     791|     879|       1
---------------------------------------------------------------------------
  750-  790 (61.16/15.06)	LRNSRIASHN.STPASNNATNPlDVSQLRPVYidSFPKLRAW
  826-  864 (66.77/102.33)	MTKSGTASGNsSTPSSGNISGS.PASSGDEAY..QRPVLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.51|      32|      75|     995|    1028|       3
---------------------------------------------------------------------------
  995- 1028 (60.40/44.82)	GVAGTALENCGSACPWPSM.PiiGALWAQKVRRWH
 1070- 1102 (57.11/35.99)	GVTGLLGHNVGGHSPRVRLaP..GFLYLRTCRDFH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.25|      43|      79|     561|     608|       4
---------------------------------------------------------------------------
  561-  608 (65.18/45.45)	GSQLT...DALKNALIATPASSLMELQRLYhfainGSEEEQAAAAKILCGA
  640-  685 (68.07/37.09)	GSHLVaymSMLNVILFGLSSSDIVHVLSLY.....GVVPEVAAALMPICEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.89|      30|     457|     713|     748|      13
---------------------------------------------------------------------------
  713-  748 (50.04/46.41)	FLFLLRLWKFyrpshdHCIMGPGGSNGSAITLEYLL
 1178- 1207 (56.85/36.30)	WLLSSREWKV......GVVSGPGSCIMEGYAMAYLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23294 with Med33 domain of Kingdom Viridiplantae
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