<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23289

Description Luminal-binding protein 5
SequenceMSSRHKKEEESLTSKRNSQICSILHRETERKRNSGTMDRSRRDGASSILLGIVLLGFLFAFGTAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTESERLIGEAAKNQAAVNHERTIFDVKRLIGRKFDDKEVQKDMKLFPYKIVNKDGKPYIQVKIKDGETKVFSPEEISAMVLTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSNQHQVRVEIESLYDGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKHQIDEIVLVGGSTRIPKVQQLLKEYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNSVIPTKKSQVFTTYQDQQTTVSIQVFEGERSMTKDCRELGKFDLSGIAPAPRGTPQIEVTFEIDANGILNVKAEDKGSGKSEKITITNERGRLSQEEIDRMVREAEEFAEEDKKVKEKIDARNSLETYIYNMKNQINDKDKLADKLESDEKEKIETAVKEALEWLDENQSAEKDDYDEKLKEVEAVCNPIITAVYQRSGGAPGGGADGADDDSHDEL
Length702
PositionUnknown
OrganismCinnamomum micranthum f. kanehirae
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Magnoliidae> Laurales> Lauraceae> Cinnamomum.
Aromaticity0.06
Grand average of hydropathy-0.549
Instability index32.89
Isoelectric point5.41
Molecular weight77780.01
Publications
PubMed=30626928

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW
integral component of membrane	GO:0016021	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23289
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.02|      19|      20|     627|     645|       1
---------------------------------------------------------------------------
  627-  645 (28.76/18.32)	LA..DKLESDEKEKIETAVKE
  647-  667 (24.26/14.25)	LEwlDENQSAEKDDYDEKLKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.72|      19|      20|     117|     136|       2
---------------------------------------------------------------------------
  117-  136 (27.26/25.37)	RLIGEAAKNQaAVNHERTIF
  140-  158 (32.46/24.66)	RLIGRKFDDK.EVQKDMKLF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.75|      15|      20|     452|     466|       3
---------------------------------------------------------------------------
  452-  466 (26.04/15.41)	GGEETKDILLLDVAP
  475-  489 (27.71/16.81)	GGVMTKLIPRNSVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.48|      34|     188|     319|     353|       4
---------------------------------------------------------------------------
  319-  353 (51.71/30.52)	KDISKDNRALGKLRREA.ERAKRAlSNQHQVRVEIE
  515-  549 (56.77/29.98)	RSMTKDCRELGKFDLSGiAPAPRG.TPQIEVTFEID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.69|      39|     188|      60|     100|       5
---------------------------------------------------------------------------
   60-  100 (62.39/53.00)	AFGTAKEEATKlgTVIGIDL.GTTYSC.VGVYKNGHVEIIAND
  251-  291 (57.29/41.22)	AYGLDKKGGEK..NILVFDLgGGTFDVsILTIDNGVFEVLATN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.60|      20|      23|       5|      24|       6
---------------------------------------------------------------------------
    5-   24 (32.64/25.17)	HKKEEESLTSKRNSQICSIL
   30-   49 (32.95/25.48)	RKRNSGTMDRSRRDGASSIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     169.96|      58|     393|     167|     229|       7
---------------------------------------------------------------------------
  167-  229 (81.00/80.84)	GKPYiQVKIKDgETKVFSPEEISAMVlTKMKETAEAflGKKIK...DAVVTVPAYFNDAQRQAT.KD
  564-  625 (88.96/64.97)	GKSE.KITITN.ERGRLSQEEIDRMV.REAEEFAEE..DKKVKekiDARNSLETYIYNMKNQINdKD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23289 with Med37 domain of Kingdom Viridiplantae
Unable to open file!