<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23278

Description Uncharacterized protein
SequenceMAGPNQGMPTMQMGQMPGMHMQPVQQNPLQVPLGPPQGNPQQPQHPGPAQVQQAHPQQPDNRPLDPITRFRTLLPRLKESLVNLFKTGAHLFYQNAHQDTGAQKDNVNGRFEKCLEEFYAICDQLEISLRLAHEIIQQDKDSQRNTPNSTVPPKADPTQPEGQVYSQYLSTVRVQIGCAKEIRDLLLECLKNFPEHPHS
Length199
PositionTail
OrganismElysia chlorotica (Eastern emerald elysia) (Sea slug)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Sacoglossa> Placobranchoidea> Plakobranchidae> Elysia.
Aromaticity0.05
Grand average of hydropathy-0.811
Instability index49.79
Isoelectric point6.43
Molecular weight22421.16
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23278
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.15|      14|      28|       3|      30|       1
---------------------------------------------------------------------------
    3-   18 (27.30/ 7.26)	GPNQGMPtmQMGQMPG
   34-   47 (32.84/19.53)	GPPQGNP..QQPQHPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.62|      12|      28|      22|      33|       2
---------------------------------------------------------------------------
   22-   33 (22.65/ 9.52)	QPVQQNPLQVPL
   53-   64 (23.97/10.47)	QAHPQQPDNRPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23278 with Med29 domain of Kingdom Metazoa
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