<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23277

Description Uncharacterized protein (Fragment)
SequenceMSVQIKKEPGLGSSGPGSVGHQVEVKKEATFSDVTSSKDQLARKVKLTLMQAWQERWSEIQWAIQLKKLLAAYSGESVDIAEILMQQALVGSSPNQLILSYLKHSVLSLMIPFNTIIFYITKFDDFSRPHCALALIRLTGVFGLKISLSPCQDSPVQLVRTMLKLIHWLVKALLTCLQRLSDSRQSMSQEYFEIMDNSSRFIVSILERRPVRGLLQIARMDSPEEYRDFEQSEMNARGIMSQIPPSTMTDETREKITSALTLLSKLEEQEVHSEAVLEVIHAPIIPTINGLVALEAVLNTSSDIQPFVDQVLMVSRLMKLSMSQLCLEIFRACFMGFIDTSDFSEDLQWATFTFLKVPSILNNMKQQMPNWEMNYDAERALGMLLEYTYLLDQTDIKHSYDMMGQFIIELQKAKILTEDQKNNFSQRRAEQRSHLRPSDISGSSESKSLIRVTQAESTVNNILKSLDSDPHRNSDQMVKVLTIMLQGHSFDMLRLAAACAGHLHDFMSKLIRINEIASHTQASNDTIRISHWSQLFDVTFLMVISTFQQHGLEIALPSRENEASLVVQWARRWLPENGKYKNCELVTGEEQDKVDYILKLMLSNAEITPCGPIQSYKELIKYLPYALQEVIYAMEHMSINMDQVKDIIDNICKQNMKSFILVCTTYLCSYMNMVGESARAKPLRMLEMLIAHQGMDMKQVMQTILDNIVFDILPEGHAQRPARRYLLSSRETNSRAISETLRQSFNRGWLNLESIHKLDQLLSVRGPDWFCWEMVEHILINSHIEDSSQSLSLAVAIMHLDLERLTVSLVRRLLPRLLAQPQSGLLADPRGYCLSKLCVLCITATHMSKVGQKEPYVRRFHRGGTDIDLDMDQDDSEPQPAKIRKMSEPQLTLSLEEFNLDAIADKEDGEGMPNYDVKEPLNKAL
Length925
PositionTail
OrganismElysia chlorotica (Eastern emerald elysia) (Sea slug)
KingdomMetazoa
LineageEukaryota> Metazoa> Spiralia> Lophotrochozoa> Mollusca> Gastropoda> Heterobranchia> Euthyneura> Panpulmonata> Sacoglossa> Placobranchoidea> Plakobranchidae> Elysia.
Aromaticity0.07
Grand average of hydropathy-0.179
Instability index54.78
Isoelectric point5.80
Molecular weight105471.73
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23277
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     154.48|      50|      55|     597|     651|       1
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  599-  651 (79.27/73.79)	KLMLSNAeITPCGP.IQSYKELI....KYLPYALQEVIYAmeHMSINMDQV.KDIIDNI
  653-  708 (75.22/51.24)	KQNMKSF.ILVCTTyLCSYMNMVgesaRAKPLRMLEMLIA..HQGMDMKQVmQTILDNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     197.09|      63|     399|     104|     169|       5
---------------------------------------------------------------------------
  104-  169 (103.39/89.02)	HSVLSLMIPFNTIIFYITKFDDFSR.PH....CALALIRLTGVF...GLKISLsPCQDSPVQLVRTMLKliHWL
  504-  574 (93.70/69.40)	HDFMSKLIRINEIASHTQASNDTIRiSHwsqlFDVTFLMVISTFqqhGLEIAL.PSRENEASLVVQWAR..RWL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     118.43|      35|     364|      33|      88|       6
---------------------------------------------------------------------------
   36-   70 (60.09/59.96)	SSKDQLARKVKLTLMQAWQERWSEIQWAIQLKKLL
  728-  762 (58.33/22.03)	SSRETNSRAISETLRQSFNRGWLNLESIHKLDQLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23277 with Med24 domain of Kingdom Metazoa
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