<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23264

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X3
SequenceMVRMLADVGSCTTLLRCNYRSCWIPFDIYMENAMDSRQIPIKSAIDVLKEGIKTLQIINQASWHETFLALWLSALRLVQRERDPPEGPIPHLEARLCMLLSIVPLAVLDVLRDDSEHNPSSVPVPVKSENRYEKQAVCGLMSSVQVLGQFSGLLCPPALVVDAANQAARKAASFIYNSMNEKDDSFTGIHANSNTKAGGNLRHLIVEACIARNLMDTSVYFWPGYVSTSVTSLSDSSPLEKSPWLTFMEGTPLNNSLINALTATPASSPAEIEKLYYIALNGSELERPAAAKILCGASLGRGWYIQEHVVHYVIKLLASPVPHSHSGTWGPLVDNTSMLSAVLRGASCVDTVHILSLHGVVPTVAASLLPLCEAFGSITPTPNSTGDEPSTSVYMAFSLAFLFLIRLWKFCRPPIDQCITEGGIAVGGLEYLLSLHNNWVMSSQDKLKNNQNLFDSASFKPVYIDSFPKLRALYCQYKSCVASTLSGISTGNSIHQTASVILSMIYQKMMTKGGISSSNSSSPSSNACSSLINSGEDALQRPMLPAWEVLEALPFVLEAILTACVHGRLSSRDLTTGLRDLVDFLPASLAAIIDYFSSEITRGVWKLVPMNGTDWPSPAAVLQSVESEIKAILTHVGVEVPNCSSGGSPVMLPLPMAALVSLSITFKLDKSLEYMHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNESVAQLVRSCFTSFLGILCGSTSNLTAECSVNGLLGSSITAPGACPFVAPGFLFLRSCRNIHNVQYLNDVIVGLVTEYSNELAGRRTSSGSSHLKFNEASISVAAQSVKEMATLGASLLCAAGGIQLVQELYKETIPTWLLSSRDLKRKNDSVVSYILEGYAIAYLLTLSGSIIWGVGTNLPSSKLSRRNRIIGVHLDFLAEVMERKISLSCNPITWKTYVCCLVGLIVSLAPTWVQEVKVETLRKLARGLSRWNEHELALSLLQRGGTAAMGALAELVNVIEFKHKKPCS
Length1017
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.07
Grand average of hydropathy0.183
Instability index47.80
Isoelectric point7.47
Molecular weight110397.36
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23264
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.07|      22|      30|     231|     259|       1
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  231-  256 (29.75/34.99)	TSLSDSSPLEKSPwLTFMegtPLNNS
  262-  283 (38.31/18.66)	TATPASSPAEIEK.LYYI...ALNGS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     211.07|      49|     297|     569|     617|       2
---------------------------------------------------------------------------
  569-  611 (62.76/32.16)	..........................LSSRDLTTGLRDLVDFLPASLAAIIDY...F....SSEITRGVWKLVPMN
  612-  685 (53.87/26.63)	GTDWPSpaavlqsveseikailthvgVEVPNCSSGGSPVM..LPLPMAALVSLsitFkldkSLEYMHAITGAALEN
  867-  903 (40.60/18.37)	..........................LSSRDLKRKNDSVVSYILEGYA..IAY...L....LTLSGSIIWGV....
  904-  944 (53.84/26.61)	GTNLPS..................skLSRRNRIIGVH..LDFLAEVMERKISL...S....CNPIT...WK.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.65|      67|      77|     696|     769|       3
---------------------------------------------------------------------------
  696-  769 (104.33/83.86)	PiiGSLWAQKVRRWHN..FI..VVSGsrSVFRHNNEsVAQLVRSCFTSFLGILCGSTSnlTAECSVNGL..LGSS.ITAPG
  776-  849 (98.33/59.08)	P..GFLFLRSCRNIHNvqYLndVIVG..LVTEYSNE.LAGRRTSSGSSHLKFNEASIS..VAAQSVKEMatLGASlLCAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.78|      22|      26|     484|     505|       4
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  484-  505 (36.96/19.00)	TLSGISTGNSIHQTASVILSMI
  511-  532 (37.82/19.60)	TKGGISSSNSSSPSSNACSSLI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.76|      10|      32|      81|      90|       5
---------------------------------------------------------------------------
   81-   90 (20.88/13.00)	ERDPPEGPIP
  116-  125 (19.88/11.97)	EHNPSSVPVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.18|      21|      29|     318|     339|       6
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  318-  339 (37.12/26.90)	ASPVPHSH.SGTWG..PLVdNTSML
  346-  369 (28.06/14.64)	ASCVDTVHiLSLHGvvPTV.AASLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.24|      24|     916|      52|      80|       8
---------------------------------------------------------------------------
   52-   80 (35.97/38.91)	IKTLQIINQ..ASWHETFLalwlsALRLVQR
  967-  992 (36.27/24.68)	VETLRKLARglSRWNEHEL.....ALSLLQR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23264 with Med33 domain of Kingdom Viridiplantae
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