<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23256

Description mediator of RNA polymerase II transcription subunit 33A-like isoform X2
SequenceMESLEWNQQVNETVTNKLKLWQQLNNETPTAWVTELIQYLNSVGVELPSPEFAHLLVSQMCSENEKDHPSMWKFLHHALASRLIFPLQLLSLLSSKVFPRRYSHPHAYALFLPLLAQHAFNFHPIASIKCTNKIIKSVDSVFHFSETFKIQDVELGHVFILFFFSIFIALIDTTLNDWGIQVTFNERSCLVPTGDQYMVIDHNVTHNFKKGDYHEQIRKRNSITALEVLERLSETRKATILLQSVLLNMMLADVGSCTTLLRCNYRSCWIPFDIYMENAMDSRQIPIKSAIDVLKEGIKTLQIINQASWHETFLALWLSALRLVQRERDPPEGPIPHLEARLCMLLSIVPLAVLDVLRDDSEHNPSSVPVPVKSENRYEKQAVCGLMSSVQVLGQFSGLLCPPALVVDAANQAARKAASFIYNSMNEKDDSFTGIHANSNTKAGGNLRHLIVEACIARNLMDTSVYFWPGYVSTSVTSLSDSSPLEKSPWLTFMEGTPLNNSLINALTATPASSPAEIEKLYYIALNGSELERPAAAKILCGASLGRGWYIQEHVVHYVIKLLASPVPHSHSGTWGPLVDNTSMLSAVLRGASCVDTVHILSLHGVVPTVAASLLPLCEAFGSITPTPNSTGDEPSTSVYMAFSLAFLFLIRLWKFCRPPIDQCITEGGIAVGGLEYLLSLHNNWVMSSQDKLKNNQNLFDSASFKPVYIDSFPKLRALYCQYKSCVASTLSGISTGNSIHQTASVILSMIYQKMMTKGGISSSNSSSPSSNACSSLINSGEDALQRPMLPAWEVLEALPFVLEAILTACVHGRLSSRDLTTGLRDLVDFLPASLAAIIDYFSSEITRGVWKLVPMNGTDWPSPAAVLQSVESEIKAILTHVGVEVPNCSSGGSPVMLPLPMAALVSLSITFKLDKSLEYMHAITGAALENCASGCPWPSMPIIGSLWAQKVRRWHNFIVVSGSRSVFRHNNESVAQLVRSCFTSFLGILCGSTSNLTAECSVNGLLGSSITAPGACPFVAPGFLFLRSCRNIHNVQYLNDVIVGLVTEYSNELAGRRTSSGSSHLKFNEASISVAAQSVKEMATLGASLLCAAGGIQLVQELYKETIPTWLLSSRDLKRKNDSVVSYILEGYAIAYLLTLSGSIIWGVGTNLPSSKLSRRNRIIGVHLDFLAEVMERKISLSCNPITWKTYVCCLVGLIVSLAPTWVQEVKVETLRKLARGLSRWNEHELALSLLQRGGTAAMGALAELVNVIEFKHKKPCS
Length1263
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.08
Grand average of hydropathy0.137
Instability index45.87
Isoelectric point6.94
Molecular weight138884.80
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23256
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.91|      28|      76|     170|     198|       1
---------------------------------------------------------------------------
  170-  198 (50.30/39.79)	LIDTTLNDWGIQVTF...NERSCLVPTgDQYM
  246-  276 (51.61/35.32)	LLNMMLADVGSCTTLlrcNYRSCWIPF.DIYM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.65|      67|      77|     942|    1015|       2
---------------------------------------------------------------------------
  942- 1015 (104.33/96.66)	PiiGSLWAQKVRRWHN..FI..VVSGsrSVFRHNNEsVAQLVRSCFTSFLGILCGSTSnlTAECSVNGL..LGSS.ITAPG
 1022- 1095 (98.33/68.07)	P..GFLFLRSCRNIHNvqYLndVIVG..LVTEYSNE.LAGRRTSSGSSHLKFNEASIS..VAAQSVKEMatLGASlLCAAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     211.07|      49|     297|     815|     863|       3
---------------------------------------------------------------------------
  815-  857 (62.76/41.21)	..........................LSSRDLTTGLRDLVDFLPASLAAIIDY...F....SSEITRGVWKLVPMN
  858-  931 (53.87/34.14)	GTDWPSpaavlqsveseikailthvgVEVPNCSSGGSPVM..LPLPMAALVSLsitFkldkSLEYMHAITGAALEN
 1113- 1149 (40.60/23.58)	..........................LSSRDLKRKNDSVVSYILEGYA..IAY...L....LTLSGSIIWGV....
 1150- 1190 (53.84/34.11)	GTNLPS..................skLSRRNRIIGVH..LDFLAEVMERKISL...S....CNPIT...WK.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.07|      22|      30|     477|     505|       5
---------------------------------------------------------------------------
  477-  502 (29.75/33.45)	TSLSDSSPLEKSPwLTFMegtPLNNS
  508-  529 (38.31/17.73)	TATPASSPAEIEK.LYYI...ALNGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.78|      22|      26|     730|     751|      10
---------------------------------------------------------------------------
  730-  751 (36.96/24.13)	TLSGISTGNSIHQTASVILSMI
  757-  778 (37.82/24.89)	TKGGISSSNSSSPSSNACSSLI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23256 with Med33 domain of Kingdom Viridiplantae
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