<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23251

Description mediator of RNA polymerase II transcription subunit 23 isoform X2
SequenceMDQSQNQRTVASTTTSSRSFQFHPARVPILDLFNLYLGLGRNSRNKSDDPLREPPNKTQKRVHAINREVPPPNEQFIIDFEQLQTQFPDHEQLRSVTEAILISLVVQCSGHGPRSDFLLFVLRSLCGIGCINWDTFLPSLLSSVSSAELPVGQMSQAVSTVTSSSLSQSGMLPPPNTIANSSNFQSSNPASPLTSVHTIGSPAQSSIEPLSCAALSPVKSSDISSNGQQSKLRGSPSVRNNDISNSSLRQLCCKIILTGLEFSLKPVTYAEIFHHMLNWLVNWDQRQQGVDESDILKSWRSGRAVIAWLHSCLDVIWLLVDEGKCRVPFYELLRSDLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTQRILNQTTPTISESAHLRLAAISYLSVLGEPLHGEETAISVQKGSLDWERAVRCIRHALRSAPSPDWWRRVLVLAPCYRLLSQGTTAGAVFSSEMICEATIDRIVELLKLTNSEINCWQDWLVFSDIFYFLTKSGCIDFVDFVDKLVSRLTEGDHHILKTNHVTWLLAQIIRIELVMNALNSDSRKVETTRKVLSFHREDRSSDPNSPQSILLDFVSSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQASKGDRMMDYMNMDERSVGMFWVVTYTMAQPACETVMNWLTSAGVIDLLPATNLQPAERLVATREVSPLPMSLLSGFSLNLCLKLSYQMEDSLFSGQVVPSIAMVETYTRLLLIAPHSLFRSHFNHLVQKSPSMLSKPGVTLLLLEILNYRLLPLYRYQGKSKTLMYDVTKIISALRVKRGDHRVFRLAENLCLNLIFSLRDFFLVKREGKGPTEFTETLNRVTVITLAILIKTRGITDADHLLYLQNMLEQIMATSLHTWSEKTLRHFPSVLREALSGRQDKRSLAIQAWQQAETTVIHQCTQLLSPSADPSYVNTYINHSFPQHRQYLCAGALILMHGHAENINSGNLGRVLREFSPEEVTSNIYTMVDVMLHHMQIELQQGHLIQDLMLKACASLAFFVWTNELLPLDILLLALIDRDDDPHALRIVISLLDMPDLQQRVKLFCLTRGHPEHWLYTGVFKRVELQKALGNHLSWKDRYPVFFDDIAARLLPIIPLIIYRLIENDAMDTAERLLALYSPFLAYYPLRFTFVRDILAYFYGHLPGKLIVRILYVLDFSKIPFSESFPQQMSSSNPAMCPPLDYFTTLLLGIVNNVIPPLHNNSKSGCIGDASNSTLRTAQNKPPIVSQSGPANVSEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSASQIVQSLVQIVVNIQPTLIQSSNSLHSSSNGVGQSSVLPTSPSGGSTDSLGASRSTPSVSGVNTTNFASRSGYTSQQLSCLLIQACGLLLAQLPSDFHVQLYSETTRIIKENWWLTDMKRSLAEIDSAVGYALLDPTWAAQDNTSTAIVSS
Length1454
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.08
Grand average of hydropathy-0.064
Instability index51.83
Isoelectric point6.46
Molecular weight163470.73
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23251
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.11|      17|     102|      70|      88|       1
---------------------------------------------------------------------------
   70-   88 (28.97/25.18)	PPPNEqfIIDFEQLQTQFP
  173-  189 (33.14/20.97)	PPPNT..IANSSNFQSSNP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.03|      23|     102|    1237|    1264|       2
---------------------------------------------------------------------------
  200-  222 (37.33/13.78)	GSPAQSSIEPLSCAALSP..VKSSD
 1240- 1264 (35.70/24.95)	GCIGDASNSTLRTAQNKPpiVSQSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.27|      22|     100|    1090|    1139|       3
---------------------------------------------------------------------------
  486-  508 (35.82/ 9.25)	VELLKLTNSEINcWQDW..LVFSDI
 1098- 1121 (35.45/49.39)	VELQKALGNHLS.WKDRypVFFDDI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.60|      14|     109|     710|     727|       6
---------------------------------------------------------------------------
  713-  727 (22.69/20.32)	NLCLKLSYQMEDsLF
  824-  837 (26.92/10.25)	NLCLNLIFSLRD.FF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.71|      19|     110|     544|     563|      14
---------------------------------------------------------------------------
  544-  563 (30.01/22.23)	VTWLLAQIIrIELVMNALNS
  657-  675 (37.70/23.38)	VTYTMAQPA.CETVMNWLTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.86|      25|     122|     122|     149|      15
---------------------------------------------------------------------------
  122-  149 (40.67/34.76)	LRSLCgigCINWDTFLPSLLSSVSSAEL
  248-  272 (45.19/29.22)	LRQLC...CKIILTGLEFSLKPVTYAEI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23251 with Med23 domain of Kingdom Viridiplantae
Unable to open file!