<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23249

Description U-box domain-containing protein 52-like isoform X2
SequenceMWLQKNPWDKKDGVNGIVAVAIDTDKGSQNALKWAIDHLLTKGSTVVLIHVNVKTPSSIATPKAGMNSLIDQCSMLCKDPDDQTKEIFRPYRVFCARKDIQCKDIVLEHGDVSKALIEYTSQSAIEHLVIGSSSKSSFLKKFKVVDIPGTVSKGAPDFCTVYIVAKGKIHSMRSASRTAPAFSPLQTQLSQASSRSDQSDHRLPLANSVRANERRSFEGPRRSQEGTESFRSPFTRKRPDDKSYGDLSMQDTDITFISSGRPSTDRLFPSMYNNNNNSESSFSNPRLSYSSDTDGNLSYSFESMHYGRRSIDIGTPDFSSFSHDSDGLSSCASQNMDDVEAEMRRLKLELKQTMEMYSTACKEALTAQQKAVELQRWKIDEERRLEEARMAEENALAIAEKEKAKSKAAMEAAEAQKRIAELEAQKRINAEMKALREAEEKRKVVDALTNNDVRYRRYAIEEIEAATNFFAESLKIGEGGYGPVYKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFCRGDSPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPPSVADNVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARPPMGLTHHVGKSIEKGTFGEMLDPRLTDWPVEEALGFAEMAIKCAELRRKDRPDLGKEVMPELNRLRELAENNDNHSLFSGFISPSTQSQVSLQMDGSSSPLPYSGDSTRNTSSPL
Length786
PositionTail
OrganismCicer arietinum (Chickpea) (Garbanzo)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Cicereae> Cicer.
Aromaticity0.07
Grand average of hydropathy-0.480
Instability index48.22
Isoelectric point6.40
Molecular weight87595.27
Publications
PubMed=26259924

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23249
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.98|      43|      47|     340|     385|       1
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  340-  382 (72.41/53.85)	EAEM.RRLKLELKQTMEMYSTACKEALTAQQKAVELQRWK.IDEE
  387-  431 (57.57/34.05)	EARMaEENALAIAEKEKAKSKAAMEAAEAQKRIAELEAQKrINAE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     109.15|      25|      26|     195|     219|       2
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  195-  217 (32.61/17.79)	...........RSDQS.....DHRLPLANSVRANERRSF
  218-  244 (28.38/14.48)	EG.......prRSQEG...teSFRSPFTRK.RPDD.KSY
  245-  268 (19.19/ 7.31)	.G..............dlsmqDTDITFISSGRPSTDRLF
  269-  301 (28.98/14.95)	P.smynnnnnsESSFS.....NPRLSYSSDTDGNLSYSF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     358.93|     116|     133|     500|     630|       3
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  503-  625 (190.91/156.90)	AAQGR.....SQFQRE..VEVLSCIRHPNMVLL..LGACPEYGclvYEHMANGSLDDCLFCRGDSPPL.PWQLRFKIA.AEIGTGLLFLHQtKPEPLVHRDLKPAnilLDR.NYVAKISDVG..LARLVPPSVADNV
  632-  761 (168.03/101.86)	SAAGTfcyidPEYQQTgmLGVKSDIYSLGIIFLqiLTARPPMG...LTHHVGKSIEKGTFGEMLDPRLtDWPVEEALGfAEMAIKCAELRR.KDRPDLGKEVMPE...LNRlRELAENNDNHslFSGFISPSTQSQV
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.17|      46|      91|      11|      62|       4
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   11-   62 (63.27/64.70)	KDGV..NGIVAVAIdTDKGSQNalkwAIDHLL....TKGSTVVLIHVnVKTPSSIA..TP
  103-  156 (62.90/43.03)	KDIVleHGDVSKAL.IEYTSQS....AIEHLVigssSKSSFLKKFKV.VDIPGTVSkgAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23249 with Med32 domain of Kingdom Viridiplantae
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