<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23228

Description Uncharacterized protein
SequenceMANNSQFTGMQPPIPPLAGPPQGSIPSMSLQFQPMLPPQQAQPYVSGSSQHFQPLGHANVVMPPQPPQIQFPQPMQQVAGRPVVGGHNMSQGPPNPHDFQRNPPMSNNHMTGSGGPGFPLSSSYNQVNADSSSSQYQTQIHDHRFPSGVQPWMPTSNQNVNSATTMQNTGELAAPLVVPEANNGVDSVETTPSDWIEHTSRNGKKYYYNRRTRISSWEKPLELMTEMERADASTDWREFTSPAGRKMLSALIIFCRYYYNKVTRKSNWKMPDEVKLAREKHTDSHASDFGSISSVKTSSPGADGSFVSAQGAMTSPIAVSPVANLPTIVASESSLSVTLGNSVVIPARSETTSAQDEVACDDGASPDNREEVKHVAAITGIGSAAPSEEKTVELGPLVYESKVEAKNAFRTLLESANIGSDCTWDQAMRAIINDRRYGALKSLGERKQAFNEYLSQRKKLEAEERRVKQKKAREDFRIMLEDCKELSPSSRWSKVISIFEHDERFKAVERAKDREDLFEDYKEELEKKERARALEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCPRLEKIDRLEIFQEYIRDLEREEEEQRKLRMEELRKAERKNRDEFRKLMEEHVAVGMLNAKTIWRDYCIKIKDIAAYQAVSSNTSGSSAKDLFADVVDELDKQYLDDKSRIRDAVRMTEIGLTSTWTLDDFKDAIAKYISSPPISDTNLKLVFEELLERAREREEKEAKKRKRLADEFYELLHASKEITASSKWEDCKSLFGDRITGDESLLLEIFDKFVNELKEKAKEKDRKRQEDKARKEKERKDREKKKEKHRRDKHRGDKSRKERERSKRDSSDSDKEIRRSGSDRDKRDSDKEIKRSGDKKIKRSDSDKEIKRSDSDKEIKRPGSERDKRDSDKEIKRPGSERDKKDSDKEIKRSGSDRDRKHRKRHRHSSDDDDSEKDHSRSSYRRGSDYKKVKQMDLHRRSLEADSEGKRKKRKRDHRSDSHRESDDEDHKDWESGDDVEV
Length1021
PositionUnknown
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.06
Grand average of hydropathy-1.179
Instability index53.27
Isoelectric point8.61
Molecular weight117535.56
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23228
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     144.52|      15|      15|     893|     907|       1
---------------------------------------------------------------------------
  851-  865 (29.90/14.12)	DSDKEIRRSGSDRDK
  893-  907 (31.36/15.21)	DSDKEIKRPGSERDK
  909-  923 (31.36/15.21)	DSDKEIKRPGSERDK
  925-  939 (30.13/14.29)	DSDKEIKRSGSDRDR
  983-  997 (21.77/ 8.06)	EADSEGKRKKRKRDH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.88|      15|      19|      11|      29|       3
---------------------------------------------------------------------------
   11-   25 (31.56/12.14)	QPPIPPLAGPPQGSI
   33-   47 (28.32/15.83)	QPMLPPQQAQPYVSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     115.64|      21|      24|      82|     102|       4
---------------------------------------------------------------------------
   54-   77 (20.73/ 9.22)	.PL..GHAnvvM..PPQPPQiqfPQPMQQ
   81-  101 (41.78/26.37)	RPVVGGHN...M..SQGPPN...PHDFQR
  102-  124 (31.96/18.36)	NPPMSNNH...MtgSGGPGF...PLSSSY
  125-  142 (21.17/ 9.58)	NQVNADSS...S..SQYQTQ...IHD...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     164.23|      26|      38|     460|     485|       5
---------------------------------------------------------------------------
  450-  475 (38.04/18.49)	FNEYLSQRKKLEAEERRVK.......QKK...AR.........ED
  476-  495 (23.09/ 8.18)	FRIMLEDCKELSPSSRWSK.......V..................
  496-  516 (26.05/10.23)	ISIFEHD.ERFKAVER...........AK...DR.........ED
  585-  617 (26.50/10.53)	FQEYIRDLEREEEEQRKLRmeelrkaERK...NR.........DE
  726-  750 (30.37/13.20)	FEELLERAREREEKEAK.K.......RKR...LA.........DE
  751-  788 (20.18/ 6.17)	FYELLHASKEITASSKWED.......CKSlfgDRitgdeslllEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.47|      36|      49|     205|     241|       6
---------------------------------------------------------------------------
  194-  233 (63.08/43.29)	DWIEHTS..........rngkKYYYNRRTRISSWEKPLELMTEMERADAS
  235-  284 (60.38/36.32)	DWREFTSpagrkmlsaliifcRYYYNKVTRKSNWKMPDEVKLAREKHTDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.30|      20|      20|     941|     960|       8
---------------------------------------------------------------------------
  941-  960 (36.54/17.81)	HRKRHRHS................SDDDDSEKDHSR
  974- 1009 (23.76/ 8.87)	QMDLHRRSleadsegkrkkrkrdhRSDSHRESDDED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      24.49|       8|      20|     678|     688|       9
---------------------------------------------------------------------------
  678-  688 ( 9.42/13.38)	LDDksrIRDAV
  701-  708 (15.07/ 8.02)	LDD...FKDAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.49|      17|      18|     287|     303|      10
---------------------------------------------------------------------------
  287-  303 (29.25/17.28)	SDFGSISSVKTSSPGAD
  308-  324 (29.25/17.28)	SAQGAMTSPIAVSPVAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      90.45|      22|      39|     522|     543|      11
---------------------------------------------------------------------------
  522-  543 (34.75/21.36)	KEELEKKERARALEEQKRNRVE
  545-  562 (23.11/11.44)	LEFLKSCDFIKA.SSQWRK...
  564-  583 (32.59/19.52)	QDRLEADERCPRLE..KIDRLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.48|      10|      18|     364|     373|      16
---------------------------------------------------------------------------
  364-  373 (16.68/ 8.92)	ASPDNREEVK
  384-  393 (15.80/ 8.01)	AAPSEEKTVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.30|      13|      18|     407|     419|      17
---------------------------------------------------------------------------
  407-  419 (20.77/14.96)	NAFRTLLESANIG
  426-  438 (22.53/16.90)	QAMRAIINDRRYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.10|      15|      22|     151|     165|      18
---------------------------------------------------------------------------
  151-  165 (29.77/21.08)	PW.MPTSNQNVNSATT
  175-  190 (22.33/13.98)	PLvVPEANNGVDSVET
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23228 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AKEKDRKRQEDKARKEKERKDREKKKEKHRRDKHRGDKSRKERERSKRDSSDSDKEIRRSGSDRDKRDSDKEIKRSGDKKIKRSDSDKEIKRSDSDKEIKRPGSERDKRDSDKEIKRPGSERDKKDSDKEIKRSGSDRDRKHRKRHRHSSDDDDSEKDHSRSSYRRGSDYKKVKQMDLHRRSLEADSEGKRKKRKRDHRSDSHRESDDEDHKDWESGDDVEV
2) ETTSAQDEVACDDGASPDNREEVKHVAAITG
3) MANNSQFTGMQPPIPPLAGPPQGSIPSMSLQFQPMLPPQQAQPYVSGSSQHFQPLGHANVVMPPQPPQIQFPQPMQQVAGRPVVGGHNMSQGPPNPHDFQRNPPMSNNHMTGSGGPGFPLSSSYNQVNADSSSSQYQTQIHDHRFPSGVQPWMPTSNQNVNSATTMQNTGELAAPLVVPEANNGVDSVETTPSDWI
800
350
1
1021
380
196










Molecular Recognition Features






MoRF SequenceStartStop




1) VKQMD
972
976