<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23227

Description Uncharacterized protein
SequenceMSSTMNENLQETARRRKMEMTEVIHSPLQLICYLYEHCEHEADTSTFFCVGLVDTKFCFCCMIDLEPMDICTDSTSLPCEISSCDVRALEGHTSEVFVCAWSPEGSLLASGSGDSTARIWTIGDGSGNPTMQRMPPNVMVLKHLDSRATEENNDVTTLDWNRKGTLLATGSYDGQARIWTRSGSLFQTLNKHEGTIFSVKWNKKGDYLLSGSTDRTAVVWNVKSGELKQQFCFNAGFLDADWLDNNSFAIGSTDNKVYICKVGVNQPVKRFSGHKNAINAIKWDPSGSLLASCSEDTTVKIWSMKRDVCLHNFREHSKEINTVRWSPTGAGTSNPNKKLLLASASFDSTVKLWDIERGRLLHSLNGHREVVYSVAFSPNGDYLASGSLDKRMNICVRLPILDSD
Length404
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.08
Grand average of hydropathy-0.335
Instability index41.45
Isoelectric point6.02
Molecular weight45001.37
Publications
PubMed=22660326

Function

Annotated function 
GO - Cellular Component
histone deacetylase complex	GO:0000118	IBA:GO_Central

GO - Biological Function
transcription corepressor activity	GO:0003714	IBA:GO_Central

GO - Biological Process
histone deacetylation	GO:0016575	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23227
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     343.17|      38|      39|     160|     197|       1
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   87-  121 (45.63/24.54)	......RALEG...HTSEVF.................vcaWSPEGS.........LLASGSGDSTARIW.T
  123-  180 (50.30/27.75)	GDGSGNPTMQR...MPPNVMvlkhldsrateenndvttldWNRKGT.........LLATGSYDGQARIW.T
  181-  222 (53.36/29.84)	RSGSLFQTLNK...HEGTIF.................svkWNKKGD.........YLLSGSTDRTAVVWnV
  223-  260 (45.63/24.54)	KSGELKQQFCF...NAG.FL.................dadWLDNNS..........FAIGSTDNKVYI..C
  261-  303 (50.79/28.08)	KVG.VNQPVKRfsgHKNAIN.................aikWDPSGS.........LLASCSEDTTVKIW.S
  305-  355 (43.41/23.02)	KRDVCLHNFRE...HSKEIN.................tvrWSPTGAgtsnpnkklLLASASFDSTVKLWdI
  356-  396 (54.05/30.32)	ERGRLLHSLNG...HREVVY.................svaFSPNGD.........YLASGSLDKRMNIC.V
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23227 with Med16 domain of Kingdom Viridiplantae
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