<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP23218

Description Uncharacterized protein
SequenceMKVKVDGDAGASPAPAPVNVTVAVAVKSVEGNGSQRAVKWAVEKLLPKANRFVLVHVMPTITTIPTPSGEYIPIDGLEANVVKLYTGDKRAKCEEIFIPFKILCKRKNVETLVLEGNNPATVLLKYVNDSGIKSLVLGSFSPSYFARKLKGSSVPSIILKHAPDCCDVYVVSSNKLMTNSLNPLLAAERDLRTINKQQSSASSVSAGSVYHNRSSSVATRHLNSLEFIHGNSSSYVSPQHRSNRNLEDVTTGLEAVKGCHSSTYSEQLDIQDEVERLRLELQDTLAIYNQACEDLTHARNKVQLFSSQYLEESGKVNAAKKREENLRKIAAEEKGKHMEAEKEVEIARKLLSKEVYERQIAELKALQQSLEKKRIVDALLSSDGRYRRFTRREIEVATDYFSESKMIGEGAYGKVYKGDLDHTPVAIKVLHSDASEKKEEFLKEVEVLSQLHHPHIVLLLGACPENGCLAYEYMENGNLEDYILERNSKPLPWFSRFRILFEVACALAFLHNSKPEPVIHRDLKPGNILLDKNFVSKIGDVGLAKIISDVVPENVTEYRNSVLAGTLGYMDPEYQRTGTLRPKSDLYAFGIIILQLLTARRPNGLIMKFENAINCNSLVDILDKSVPDWPLIEVEELGRMALKCCMLRCRERPDLDTEVLPLLKRLAGYADMHSNEEKNLIHAPIQYLCPILQEVMEDPQIAADGYTYEHRAIKLWFDRYSVSPMTKQRLQHKLVTPNHTLRLAIQEWRSTFNNIQIEKN
Length760
PositionTail
OrganismSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Solanales> Solanaceae> Solanoideae> Solaneae> Solanum> Solanum subgen. Lycopersicon.
Aromaticity0.07
Grand average of hydropathy-0.325
Instability index46.89
Isoelectric point7.57
Molecular weight85566.20
Publications
PubMed=22660326

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP23218
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.91|      26|      28|     308|     334|       1
---------------------------------------------------------------------------
  308-  334 (37.57/24.35)	QYLEESGKVNAAKK...REENLRKIaAEEK
  336-  364 (37.33/20.07)	KHMEAEKEVEIARKllsKEVYERQI.AELK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.92|      22|     163|     255|     277|       2
---------------------------------------------------------------------------
  228-  249 (38.40/19.01)	IHGNSSSYVSPQHRSNRNLEDV
  256-  277 (37.52/18.43)	VKGCHSSTYSEQLDIQDEVERL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.43|      40|     220|     451|     499|       3
---------------------------------------------------------------------------
  451-  499 (56.32/61.35)	LHHPhiVLLLgaCPengcLAYEYMENGNL..EDYILERNSKPLpWFSRFRI
  681-  722 (72.10/44.70)	IHAP..IQYL..CP....ILQEVMEDPQIaaDGYTYEHRAIKL.WFDRYSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.03|      16|      20|      99|     114|       4
---------------------------------------------------------------------------
   99-  114 (27.74/17.45)	PFKILCKRKN...VETLVL
  119-  137 (19.29/10.07)	PATVLLKYVNdsgIKSLVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.37|      25|     476|     159|     185|       5
---------------------------------------------------------------------------
  160-  184 (45.39/35.97)	KHAPDCC.....DVYVVSSNKLMTNSLNPL
  196-  225 (33.98/18.87)	KQQSSASsvsagSVYHNRSSSVATRHLNSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.64|      13|      26|     383|     395|       7
---------------------------------------------------------------------------
  383-  395 (22.53/13.33)	DGRYRRFTRREIE
  409-  421 (22.10/12.96)	EGAYGKVYKGDLD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP23218 with Med32 domain of Kingdom Viridiplantae
Unable to open file!